#sample=>id=pgxbs-kftvinbu;biosample_id=pgxbs-kftvinbu;individual_id=pgxind-kftx4cpl;biosample_name=GSM220168;notes=malignant melanoma [cell line MM329];histological_diagnosis_id=NCIT:C3510;histological_diagnosis_label=Cutaneous Melanoma;pathological_stage_id=NCIT:C92207;pathological_stage_label=Stage Unknown;biosample_status_id=EFO:0030035;biosample_status_label=cancer cell line sample;sample_origin_type_id=OBI:0001876;sample_origin_type_label=cell culture;sampled_tissue_id=UBERON:0000014;sampled_tissue_label=zone of skin;icdo_morphology_id=pgx:icdom-87203;icdo_morphology_label=Malignant melanoma, NOS;icdo_topography_id=pgx:icdot-C44.9;icdo_topography_label=Skin, NOS;pubmed_id=pubmed:17363583;pubmed_label=Stark M et al. (2007): Genome-wide loss of heterozygosity and copy...;cellosaurus_id=cellosaurus:CVCL_C838;cellosaurus_label=MM329;cohorts=pgx:cohort-arraymap::arrayMap collection&&pgx:cohort-gao2021signatures::Gao and Baudis - Cancer CNV Signatures (2021)&&pgx:cohort-2021progenetix::Version at Progenetix Update 2021&&pgx:cohort-celllines::Cancer cell lines&&pgx:cohort-carriocordo2021heterogeneity::Carrio-Cordo and Baudis - Genomic Heterogeneity in Cancer Types (2021);geoprov_city=Brisbane;geoprov_country=Australia;geoprov_iso_alpha3=AUS;geoprov_long_lat=153.03::-27.47
biosample_id	reference_name	start	end	log2	variant_type	reference_sequence	sequence	variant_state_id	variant_state_label
pgxbs-kftvinbu	1	1070401	3775138	0.5351	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	1	3779411	5982849	0.1874	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	1	5986179	6512090	0.5309	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	1	7404290	7668674	0.4696	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	1	227747718	228263142	0.3231	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	1	228268421	228413912	0.7694	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	9847975	9886072	-0.5589	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	2	10141995	10487709	0.3879	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	10860732	10952462	0.4377	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	40909668	41035338	-0.5545	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	2	43823523	43874663	0.3531	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	53424748	53425312	1.0873	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	119170837	121326827	0.2394	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	176070772	176177880	0.359	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	233817387	233831604	0.6568	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	237525766	237586074	0.5996	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	238091516	238167146	0.8194	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	238174310	240442641	0.2202	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	240446910	240466086	1.3122	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	2	240468683	241273232	0.3264	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	2	241563516	242101971	0.3719	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	3	65206147	65226896	-4.6148	DEL	.	.	EFO:0020073	high-level copy number loss
pgxbs-kftvinbu	3	184182019	184796800	0.2796	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	3	194590840	194633121	0.7865	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	4	73591	10509834	0.2673	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	5	27540	1939850	0.4472	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	5	10127300	10141213	0.6865	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	5	134524385	134568099	0.6089	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	5	149598517	149633999	0.6717	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	5	160133537	160200976	0.5519	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	5	172855213	172873373	0.9683	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	5	172879512	181263911	0.1935	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	6	106236095	106255718	-1.2105	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	6	115092602	115274084	-0.6657	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	6	115489808	115513587	-0.5821	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	6	153477994	153489643	-1.0138	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	7	53973	6897682	0.2405	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	7	32216005	32416245	0.2645	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	7	97870073	102813831	0.2456	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	7	118422456	120687484	1.3068	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	124990760	125184838	1.145	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	125205973	125529868	0.5246	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	7	127205158	133172927	0.9303	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	135793928	139244322	1.066	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	139839394	139959767	0.9307	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	140733068	140866418	1.0195	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	141214834	143184422	1.0901	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	143391705	143412021	1.3162	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	143502051	146049215	1.0365	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	146053099	146560204	0.5622	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	146570140	146600533	1.4038	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	147030229	149455790	1.198	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	149461319	150286087	0.3523	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	7	150316279	152334490	1.0927	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	7	155393336	159326771	0.5466	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	22043548	22251073	0.5637	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	26433232	26456195	0.6436	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	26635019	26656775	0.5587	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	27458358	27606977	0.3664	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	8	28289158	28289211	-1.1012	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	8	46193510	46261627	0.7733	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	92322200	92342785	0.7914	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	125365117	125435041	0.5504	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	8	141094820	145049297	0.4584	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	9	5828410	5895561	0.382	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	9	21961842	22008002	-0.9061	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	69504021	76533435	-0.7495	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	76536924	76545818	-4.8184	DEL	.	.	EFO:0020073	high-level copy number loss
pgxbs-kftvinbu	9	76559073	85549273	-0.679	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	85552901	85704926	-1.2671	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	85708308	89421487	-0.581	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	89425535	89454731	0.4967	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	9	90117576	90685386	-0.8599	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	9	124290163	124355042	0.8416	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	9	124367833	132164144	0.2956	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	9	132175311	132256669	0.6442	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	9	132257627	135724095	0.3686	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	9	135724187	135736945	1.9284	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	9	135746511	138114538	0.5108	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	10	6203329	6233157	0.5945	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	10	31452319	31456427	-1.4192	DEL	.	.	EFO:0020073	high-level copy number loss
pgxbs-kftvinbu	10	79305419	79418597	0.7288	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	10	79421181	80549646	0.1877	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	10	84179250	84260919	0.4468	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	10	122082983	122086950	1.1407	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	10	124996750	124999453	1.2933	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	10	130186671	130245130	0.601	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	10	130248527	132188742	0.1951	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	10	132189238	133333185	0.5856	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	11	199231	3232601	0.4812	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	11	7651759	7666459	0.8558	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	11	20456738	20466882	-0.8403	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	11	43898203	45943553	0.2454	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	11	46216155	46434769	0.4534	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	11	47324340	47446992	0.7201	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	13	22966667	22992422	0.4214	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	14	35340183	35421630	0.4627	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	14	64605452	64796604	0.3092	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	14	90480861	90594940	0.5643	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	14	92473840	92516748	0.8702	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	14	92522126	92928717	0.207	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	14	92940692	93010359	0.6625	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	14	103520778	105532182	0.525	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	29068173	29157501	0.5159	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	34345972	34585283	0.4024	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	40003733	42409465	0.2452	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	45129535	45253255	0.4264	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	90883305	90954991	0.5336	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	15	93043847	93050392	1.608	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	16	47329	3050069	0.5902	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	16	11391270	11454909	0.6134	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	16	67153283	67979543	0.4539	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	16	70590555	70879723	0.4764	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	16	75196715	75286904	0.5664	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	16	81112525	81220287	0.3528	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	16	81392116	81723622	0.3723	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	16	83932616	84005119	0.6896	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	16	84010936	84716964	0.2325	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	16	84768992	90075044	0.3608	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	17	201272	977926	0.2651	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	17	978211	1133919	0.5676	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	17	1139727	1574300	0.2102	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	17	1575846	1754334	0.6521	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	17	35557760	47318696	0.2358	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	17	47801342	47813316	1.1367	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	17	58189420	58358499	0.4703	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	17	62664531	62712019	0.7218	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	17	73196791	83083176	0.3903	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	18	1899537	1990371	-0.6962	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	18	23216515	23300301	0.4935	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	18	37223082	37570538	0.3618	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	18	69059407	69067873	-0.9019	DEL	.	.	EFO:0030068	low-level copy number loss
pgxbs-kftvinbu	18	74513259	74519144	0.8363	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	19	266009	389848	0.2422	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	19	390602	2321406	0.6705	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	19	2326191	58572914	0.2368	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	20	41340848	41359587	0.8289	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	21	45417769	45641328	0.7069	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	21	45671422	45942708	0.3019	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	21	45948445	46007900	0.9342	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	21	46013116	46410904	0.3157	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	21	46416183	46443087	1.1551	DUP	.	.	EFO:0030072	high-level copy number gain
pgxbs-kftvinbu	22	16551783	28054318	0.1994	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	22	36047632	43564023	0.2761	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	22	43819068	45339025	0.3394	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	22	45425810	45647903	0.3187	DUP	.	.	EFO:0030071	low-level copy number gain
pgxbs-kftvinbu	22	45856022	50739637	0.3045	DUP	.	.	EFO:0030071	low-level copy number gain