biosample_id biosample_label biosample_legacy_id individual_id callset_ids group_id group_label pubmed_id pubmed_label cellosaurus_id cellosaurus_label cbioportal_id cbioportal_label tcgaproject_id tcgaproject_label external_references_id___arrayexpress external_references_label___arrayexpress external_references_id___PMID external_references_label___PMID external_references_id___cbioportal external_references_label___cbioportal external_references_id___cellosaurus external_references_label___cellosaurus cohort_ids legacy_ids notes histological_diagnosis_id histological_diagnosis_label icdo_morphology_id icdo_morphology_label icdo_topography_id icdo_topography_label pathological_stage_id pathological_stage_label biosample_status_id biosample_status_label sampled_tissue_id sampled_tissue_label tnm stage grade age_iso sex_id sex_label followup_state_id followup_state_label followup_time geoprov_city geoprov_country geoprov_iso_alpha3 geoprov_long_lat cnv_fraction cnv_del_fraction cnv_dup_fraction cell_line experiment_id series_id platform_id cell_line_id cell_line_label pgxbs-kftvhhhj pgxind-kftx3f6u pgxcs-kftvwoq5 23634996 Cancer Genome Atlas Research Network, Ley TJ et al. (2013): Genomic and epigenomic landscapes of adult... pgx:TCGA-LAML Acute Myeloid Leukemia 44992adb-cabf-4c2f-9f3b-45cf97531319 Primary Blood Derived Cancer - Peripheral Blood NCIT:C27753 Acute Myeloid Leukemia Not Otherwise Specified pgx:icdom-98613 Acute myeloid leukemia, NOS pgx:icdot-C42.1 Bone marrow NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002371 bone marrow P65Y3M0D EFO:0030041 dead (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhhm pgxind-kftx3f6y pgxcs-kftvwor4 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma c1c87e01-efc3-433f-ba79-4a79b292870b Primary Tumor NCIT:C3903 Mixed Glioma pgx:icdom-93823 Mixed glioma pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P38Y6M19D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhhp pgxind-kftx3f72 pgxcs-kftvwos2 28162975 Fishbein L, Leshchiner I et al. (2017): Comprehensive Molecular Characterization of Pheochromocytoma and... pgx:TCGA-PCPG Paraganglioma and Pheochromocytoma 51fdbdef-e2fb-43fe-8020-276ba3f70ae2 Primary Tumor NCIT:C4220 Malignant Adrenal Gland Pheochromocytoma pgx:icdom-87003 Pheochromocytoma, malignant pgx:icdot-C74.9 Adrenal gland, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002369 adrenal gland P21Y5M11D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhhr pgxind-kftx3f74 pgxcs-kftvwosk::pgxcs-kftw2cpi 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 18d3b88c-852a-4782-a6b4-9e6e1a93718d Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.2 Ascending colon NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0001156 ascending colon P67Y5M28D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhhu pgxind-kftx3f78 pgxcs-kftvwoti 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma c4a87ac6-5925-4c2b-aa66-22550d4c1871 Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27976 Stage IB EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P65Y1M10D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhi1 pgxind-kftx3f7h pgxcs-kftvwovg 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma acd56b0e-d212-43b3-be6f-be188781130a Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P47Y8M5D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhi4 pgxind-kftx3f7l pgxcs-kftvwowf 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma 63a726a2-46cd-48dc-bab7-195b16fb0f25 Primary Tumor NCIT:C3099 Hepatocellular Carcinoma pgx:icdom-81703 Hepatocellular carcinoma, NOS pgx:icdot-C22.0 Liver NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002107 liver P66Y4M4D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhi6 pgxind-kftx3f7n pgxcs-kftvwoww 28052061 Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health. (2017): Integrated genomic characterization of oesophageal carcinoma.... pgx:TCGA-ESCA Esophageal Carcinoma 75e92eaf-2c34-433b-978c-388a0bec9fcd Primary Tumor NCIT:C4025 Esophageal Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C15.5 Lower third of esophagus NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0013473 lower esophagus P58Y8M4D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhi9 pgxind-kftx3f7r pgxcs-kftvwoxv 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma b90b18c0-2c1f-45f6-a3cb-1bb0341f742f Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P66Y4M15D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhig pgxind-kftx3f7z pgxcs-kftvwozt 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma f1f5990d-91b0-4147-89f1-ffe7d2eca3e3 Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27976 Stage IB EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P81Y2M10D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhii pgxind-kftx3f81 pgxcs-kftvwp0a 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma 0297296c-67da-430d-bb1d-6c21435e37c1 Primary Tumor NCIT:C4028 Cervical Squamous Cell Carcinoma, Not Otherwise Specified pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P73Y4M29D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhin pgxind-kftx3f87 pgxcs-kftvwp1r 29438696 Radovich M, Pickering CR et al. (2018): The Integrated Genomic Landscape of Thymic... pgx:TCGA-THYM Thymoma bbe1d8fc-42fc-4e58-82fc-7ae67cdc7562 Primary Tumor NCIT:C6889 Malignant Type B2 Thymoma pgx:icdom-85843 Thymoma, type B2, malignant pgx:icdot-C37.9 Thymus NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002370 thymus P39Y5M10D EFO:0030049 alive (follow-up status) Indianapolis United States of America USA -86.16::39.77 pgxbs-kftvhhio pgxind-kftx3f89 pgxcs-kftvwp28 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma a17cb817-6489-491b-8c20-a8b1263a9e02 Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P47Y6M1D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhiq pgxind-kftx3f8b pgxcs-kftvwp2p 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 4fdddf85-30de-4666-89d2-0683e9264d6d Primary Tumor NCIT:C4044 Laryngeal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C32.9 Larynx, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001737 larynx P60Y7M7D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhit pgxind-kftx3f8f pgxcs-kftvwp3o 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma f57eb4ed-4393-4dc3-9362-a4757ef8b21d Primary Tumor NCIT:C6287 Endometrial Endometrioid Adenocarcinoma pgx:icdom-83803 Endometrioid adenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P39Y7M6D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhiv pgxind-kftx3f8h pgxcs-kftvwp46 29641966 Schmitz R, Wright GW, Huang DW, Johnson CA et al. (2018) Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. pgx:TCGA-DLBC Diffuse large B cell lymphoma 36e83268-02f1-458e-bccb-25baea134f5b Primary Tumor NCIT:C8851 Diffuse Large B-Cell Lymphoma pgx:icdom-96803 Malignant lymphoma, large B-cell, diffuse, NOS pgx:icdot-C77.0 Lymph nodes of head, face and neck NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0015870 lymph node of head P51Y2M2D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhj0 pgxind-kftx3f8n pgxcs-kftvwp5n 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma bbfeb712-4736-49c9-9cc6-74a94c6e8195 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P75Y8M29D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhj2 pgxind-kftx3f8p pgxcs-kftvwp65 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 71eb8fff-9d34-4727-9dbe-448297379ee8 Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.9 Bladder, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0018707 bladder organ P69Y9M7D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhj3 pgxind-kftx3f8r pgxcs-kftvwp6n 28810144 Cancer Genome Atlas Research Network. Electronic address: andrew_aguirre@dfci.harvard.edu, Cancer Genome Atlas Research Network. (2017): Integrated Genomic Characterization of Pancreatic Ductal... pgx:TCGA-PAAD Pancreatic Ductal Adenocarcinoma d0792a88-62e1-4b9d-8ba9-ac40e2afaa50 Primary Tumor NCIT:C9120 Pancreatic Ductal Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C25.0 Head of pancreas NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0001069 head of pancreas P64Y1M24D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhj5 pgxind-kftx3f8t pgxcs-kftvwp75 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma d3e3821a-8d26-4b15-b928-e98eee5fb537 Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0002113 kidney P74Y9M9D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhj7 pgxind-kftx3f8v pgxcs-kftvwp7m 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma 36b3081a-bb1a-4ce8-928d-aee302f5bacf Primary Tumor NCIT:C126594 Follicular Variant Thyroid Gland Papillary Carcinoma pgx:icdom-83403 Papillary carcinoma, follicular variant pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P54Y11M29D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhjc pgxind-kftx3f91 pgxcs-kftvwp92::pgxcs-kftw467g 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme 9b29182f-4d9b-4809-85f4-4d5360c107a0 Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P54Y2M27D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhjd pgxind-kftx3f93 pgxcs-kftvwp9k 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma b3c4e71f-d202-4950-8f8c-e6887eb5039c Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P65Y8M7D EFO:0030049 alive (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhji pgxind-kftx3f99 pgxcs-kftvwpb2 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma 45ff8c0e-f7a1-4f97-b8b6-5692937cc5b1 Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0002113 kidney P61Y11M7D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhjp pgxind-kftx3f9h pgxcs-kftvwpd0 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 31532d08-cb6e-40fa-9dfe-d2c6d037dcb1 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P66Y6M25D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhjr pgxind-kftx3f9j pgxcs-kftvwpdi 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma 48ecab30-cf47-43a8-af5c-026140a53ef8 Primary Tumor NCIT:C4028 Cervical Squamous Cell Carcinoma, Not Otherwise Specified pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P45Y1M6D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhju pgxind-kftx3f9n pgxcs-kftvwpeh 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 41af42ec-7521-4783-916e-2c982eef0f98 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P55Y0M3D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhjz pgxind-kftx3f9t pgxcs-kftvwpfx 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma c661ae6a-d44b-4bcf-a79a-e41cd3809e8b Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002113 kidney P76Y4M25D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhk1 pgxind-kftx3f9v pgxcs-kftvwpgf 29898407 Shen H, Shih J, Hollern DP et al. (2018): Integrated Molecular Characterization of Testicular Germ... pgx:TCGA-TGCT Testicular Germ Cell Cancer 55f38106-e784-42f4-ae95-1cf1bf86dfbf Primary Tumor NCIT:C9309 Seminoma pgx:icdom-90613 Seminoma, NOS pgx:icdot-C62.9 Testis, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000473 testis P31Y9M24D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhk8 pgxind-kftx3fa3 pgxcs-kftvwpie 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma 729ca3a4-1c6b-4c84-b4ce-150bb21d631d Primary Tumor NCIT:C3099 Hepatocellular Carcinoma pgx:icdom-81703 Hepatocellular carcinoma, NOS pgx:icdot-C22.0 Liver NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0002107 liver P55Y2M7D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhkd pgxind-kftx3fa9 pgxcs-kftvwpjw 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma a6cd09dc-ac7c-4bdc-9bb4-14f8cce6642d Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0000310 breast P66Y5M20D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhkf pgxind-kftx3fab pgxcs-kftvwpke 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 5012e9c0-a0f3-4f57-8840-fee059dfe671 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0000310 breast P43Y10M11D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhkk pgxind-kftx3fah pgxcs-kftvwplu::pgxcs-kftvy5fu 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 63f1b937-80c9-4399-8544-550b15e9d035 Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.2 Ascending colon NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0001156 ascending colon P80Y5M29D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhkm pgxind-kftx3faj pgxcs-kftvwpmb 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 44d07be5-4621-41a2-a574-35122a3e5fbc Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P60Y0M24D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhkn pgxind-kftx3fal pgxcs-kftvwpmt 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 98501f0d-8b4b-4783-a242-4a69b081aaf9 Metastatic NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0000310 breast P45Y10M8D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhkr pgxind-kftx3fap pgxcs-kftvwpq0 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma be567c0a-3833-45d7-b846-d229a8e16e16 Primary Tumor NCIT:C4044 Laryngeal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C32.9 Larynx, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001737 larynx P73Y9M15D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhkw pgxind-kftx3fav pgxcs-kftvwpri 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 45c8544c-ec60-447e-91ee-62e41e72a82f Recurrent Tumor NCIT:C43584 Rectosigmoid Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.7 Sigmoid colon NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0001155 colon P51Y6M11D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhkz pgxind-kftx3faz pgxcs-kftvwpsi 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 5c4960e6-92f7-4576-a7d8-82a7c3d7cd5f Primary Tumor NCIT:C4044 Laryngeal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C32.9 Larynx, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001737 larynx P49Y3M15D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhl1 pgxind-kftx3fb1 pgxcs-kftvwpt0 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 8f4f9492-0d28-4747-b4bb-25ddc99e4327 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P48Y1M10D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhl6 pgxind-kftx3fb7 pgxcs-kftvwpug 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma b7f4acb3-a84d-45c9-b3bc-e90200bca754 Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P68Y1M8D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhl9 pgxind-kftx3fbb pgxcs-kftvwpvf 29438696 Radovich M, Pickering CR et al. (2018): The Integrated Genomic Landscape of Thymic... pgx:TCGA-THYM Thymoma 5eecfde6-07cc-49d5-ad68-21742304df55 Primary Tumor NCIT:C6886 Malignant Type AB Thymoma pgx:icdom-85823 Thymoma, type AB, malignant pgx:icdot-C37.9 Thymus NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002370 thymus P77Y3M6D EFO:0030049 alive (follow-up status) Indianapolis United States of America USA -86.16::39.77 pgxbs-kftvhhlc pgxind-kftx3fbf pgxcs-kftvwpwe 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma 1a601591-a002-421c-a8e6-1537ef3f70e0 Primary Tumor NCIT:C6496 Myxofibrosarcoma pgx:icdom-88113 Fibromyxosarcoma pgx:icdot-C49.2 Connective, subcutaneous and other soft tissues of lower limb and hip NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003576 hip connective tissue P53Y11M4D EFO:0030041 dead (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhle pgxind-kftx3fbh pgxcs-kftvwpwv::pgxcs-kftw3xe8 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma d3280297-5674-4ae6-ab57-8d820543901e Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002113 kidney P64Y4M30D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhlg pgxind-kftx3fbj pgxcs-kftvwpxd 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma 33ecb03b-be5d-4735-bf25-045c79ae3462 Primary Tumor NCIT:C65173 Non-Keratinizing Large Cell Squamous Cell Carcinoma pgx:icdom-80723 Squamous cell carcinoma, large cell, nonkeratinizing, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P48Y11M1D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhlm pgxind-kftx3fbr pgxcs-kftvwpzb 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 3f407c72-57a9-415a-810f-8b18022bf8a5 Primary Tumor NCIT:C4004 Gastric Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C16.5 Lesser curvature of stomach, NOS NCIT:C27976 Stage IB EFO:0009656 neoplastic sample UBERON:0001163 lesser curvature of stomach EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhlo pgxind-kftx3fbt pgxcs-kftvwpzs 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma d717eecf-11dc-4e15-851a-9ea18332a48b Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P33Y0M14D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhlq pgxind-kftx3fbv pgxcs-kftvwq09 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme c4a5b225-b3db-40cd-8161-078f5a8803e8 Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P27Y5M7D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhlr pgxind-kftx3fbx pgxcs-kftvwq0r 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma c4c1a856-c132-45af-a7bf-9ca1423573f1 Primary Tumor NCIT:C3903 Mixed Glioma pgx:icdom-93823 Mixed glioma pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P32Y5M20D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhlx pgxind-kftx3fc3 pgxcs-kftvwq27 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 5d0ed8d1-6e84-4f6c-8e0e-0317aa8b0e3f Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P61Y11M10D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhly pgxind-kftx3fc5 pgxcs-kftvwq2o 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma 836bd487-091b-4728-bcd7-8065e5b76465 Primary Tumor NCIT:C3778 Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P64Y2M12D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhm0 pgxind-kftx3fc7 pgxcs-kftvwq36 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma e3e23393-8597-4091-a343-cd544111c63b Primary Tumor NCIT:C6287 Endometrial Endometrioid Adenocarcinoma pgx:icdom-83803 Endometrioid adenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P55Y10M8D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhm2 pgxind-kftx3fc9 pgxcs-kftvwq3n 28052061 Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health. (2017): Integrated genomic characterization of oesophageal carcinoma.... pgx:TCGA-ESCA Esophageal Carcinoma 56e9e53a-431a-4cf5-b39e-0c972550ba4e Primary Tumor NCIT:C4025 Esophageal Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C15.5 Lower third of esophagus NCIT:C27978 Stage IIIB EFO:0009656 neoplastic sample UBERON:0013473 lower esophagus P47Y2M0D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhma pgxind-kftx3fcj pgxcs-kftvwq63 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma c8e05740-9d67-4e06-a30f-4298b6523a5a Primary Tumor NCIT:C3771 Lobular Breast Carcinoma pgx:icdom-85203 Lobular carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P46Y1M26D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhmd pgxind-kftx3fcn pgxcs-kftvwq72 28052061 Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health. (2017): Integrated genomic characterization of oesophageal carcinoma.... pgx:TCGA-ESCA Esophageal Carcinoma c7a31a25-a496-4d26-a9d2-c42adb22bb45 Primary Tumor NCIT:C4024 Esophageal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C15.5 Lower third of esophagus NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0013473 lower esophagus P36Y8M26D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhmk pgxind-kftx3fcv pgxcs-kftvwq90 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 0629ef87-afb1-432c-86be-995192c7ed81 Primary Tumor NCIT:C4105 Keratinizing Squamous Cell Carcinoma pgx:icdom-80713 Squamous cell carcinoma, keratinizing, NOS pgx:icdot-C02.9 Tongue, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001723 tongue P51Y8M7D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhmm pgxind-kftx3fcx pgxcs-kftvwq9i 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 0ca24149-4cc4-4ad1-b448-4cc33fef851e Primary Tumor NCIT:C6393 Invasive Ductal and Invasive Lobular Breast Carcinoma pgx:icdom-85223 Infiltrating duct and lobular carcinoma pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P28Y11M1D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhmp pgxind-kftx3fd1 pgxcs-kftvwqag 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma d8ecb5e2-5af0-4a84-8b51-22c395850721 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P51Y4M5D EFO:0030049 alive (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhms pgxind-kftx3fd5 pgxcs-kftvwqbf 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma d37bed2a-bf63-43e0-91d0-6c95e4ca2d45 Primary Tumor NCIT:C126594 Follicular Variant Thyroid Gland Papillary Carcinoma pgx:icdom-83403 Papillary carcinoma, follicular variant pgx:icdot-C73.9 Thyroid gland NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P16Y7M10D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhn5 pgxind-kftx3fdl pgxcs-kftvwqf9 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-READ Rectum adenocarcinoma e9a0e4d7-a0da-4184-9736-1642fd8c1668 Primary Tumor NCIT:C43584 Rectosigmoid Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C19.9 Rectosigmoid junction NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0036214 rectosigmoid junction P70Y3M0D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhn7 pgxind-kftx3fdo pgxcs-kftvwqfq 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma 386455aa-441e-4bd2-a0a7-ad2ed278e5e6 Primary Tumor NCIT:C3704 Dedifferentiated Liposarcoma pgx:icdom-88583 Dedifferentiated liposarcoma pgx:icdot-C48.0 Retroperitoneum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003693 retroperitoneal space P78Y5M7D EFO:0030041 dead (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhn9 pgxind-kftx3fdq pgxcs-kftvwqg7 28810145 Robertson AG, Shih J et al. (2017): Integrative Analysis Identifies Four Molecular and... pgx:TCGA-UVM Uveal Melanoma b8bcaaab-72c5-4e96-9e68-28a8d1fdc93f Primary Tumor NCIT:C4239 Type B Spindle Cell Melanoma pgx:icdom-87743 Spindle cell melanoma, type B pgx:icdot-C69.3 Choroid NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0013398 choroidal gland P64Y1M2D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhng pgxind-kftx3fdy pgxcs-kftvwqi4 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme 8cfb4c3f-b25f-412c-91c7-997c64ea2d75 Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P72Y6M9D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhnh pgxind-kftx3fe0 pgxcs-kftvwqil 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 8816f14d-9fbb-4033-9ca4-6ca0db66161a Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.0 Cecum NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0000314 cecum mucosa P59Y7M28D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhnj pgxind-kftx3fe2 pgxcs-kftvwqj2 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 1e50cf55-2f11-47f4-85de-4771aa0be709 Primary Tumor NCIT:C5248 Mucinous Gastric Adenocarcinoma pgx:icdom-84803 Mucinous adenocarcinoma pgx:icdot-C16.3 Gastric antrum NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0001165 pyloric antrum P45Y1M8D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhnl pgxind-kftx3fe4 pgxcs-kftvwqjk 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 1ed822f5-fea5-46de-9681-ec484de734d8 Primary Tumor NCIT:C4648 Tongue Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C02.9 Tongue, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001723 tongue P60Y1M1D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhno pgxind-kftx3fe8 pgxcs-kftvwqki 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma faddb560-8baf-4555-a43e-dd8f20efb3f5 Primary Tumor NCIT:C5596 Prostate Acinar Adenocarcinoma pgx:icdom-85503 Acinar cell carcinoma pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P58Y0M24D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhnt pgxind-kftx3fee pgxcs-kftvwqly 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma c4d60838-3ea2-492a-85da-45a80fd20146 Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P46Y10M8D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhnx pgxind-kftx3fei pgxcs-kftvwqmx 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma 3a7c0b5f-2862-495b-81ac-16384b10490c Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27976 Stage IB EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P75Y4M4D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhho2 pgxind-kftx3feo pgxcs-kftvwqoc 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma aed669e8-23b6-4786-9398-6bb048815dfa Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P67Y10M4D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhho3 pgxind-kftx3feq pgxcs-kftvwqou 29898407 Shen H, Shih J, Hollern DP et al. (2018): Integrated Molecular Characterization of Testicular Germ... pgx:TCGA-TGCT Testicular Germ Cell Cancer d2f6bd5b-49b8-4781-856d-fc2ece7ca4c9 Primary Tumor NCIT:C9309 Seminoma pgx:icdom-90613 Seminoma, NOS pgx:icdot-C62.9 Testis, NOS NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0000473 testis P50Y7M14D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhho7 pgxind-kftx3feu pgxcs-kftvwqpt 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma ad04d034-7fff-4073-8c1f-97fac3d0bbdb Primary Tumor NCIT:C4044 Laryngeal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C32.9 Larynx, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001737 larynx P53Y8M5D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhoa pgxind-kftx3fez pgxcs-kftvwqqr 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 04652163-a674-446f-9e86-607de19e4c34 Primary Tumor NCIT:C2929 Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C09.9 Tonsil, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002372 tonsil P47Y1M5D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhoc pgxind-kftx3ff1 pgxcs-kftvwqr8 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme a6ae4423-1a57-40fc-9375-ace60d826fab Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P53Y5M9D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhod pgxind-kftx3ff3 pgxcs-kftvwqrq 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 1cc64a1e-9905-482c-b9b7-5e7392582ea6 Primary Tumor NCIT:C9159 Diffuse Gastric Adenocarcinoma pgx:icdom-81453 Carcinoma, diffuse type pgx:icdot-C16.3 Gastric antrum NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0001165 pyloric antrum P60Y5M11D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhoh pgxind-kftx3ff7 pgxcs-kftvwqso::pgxcs-kftw04gx 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma 325c9a60-dfe5-4fe4-bfd1-5393734f49fa Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002113 kidney P37Y8M11D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhoi pgxind-kftx3ff9 pgxcs-kftvwqt6 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 5cdd3886-898b-4861-a748-d4164ce14a07 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0000310 breast P57Y2M19D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhok pgxind-kftx3ffb pgxcs-kftvwqto 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 114a5b4d-46f7-404f-a257-4f0e93e58b5e Primary Tumor NCIT:C4041 Floor of Mouth Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C04.9 Floor of mouth, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0003679 mouth floor P47Y9M22D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhov pgxind-kftx3ffp pgxcs-kftvwqzc 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma bc90ead3-1a92-49c8-9d97-ef4a8751833a Primary Tumor NCIT:C3099 Hepatocellular Carcinoma pgx:icdom-81703 Hepatocellular carcinoma, NOS pgx:icdot-C22.0 Liver NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0002107 liver P51Y5M16D EFO:0030041 dead (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhoz pgxind-kftx3fft pgxcs-kftvwr0c 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma 4ad8cf4d-a916-40a3-a68e-75d642211ff2 Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P57Y11M14D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhp2 pgxind-kftx3ffx pgxcs-kftvwr1b 23634996 Cancer Genome Atlas Research Network, Ley TJ et al. (2013): Genomic and epigenomic landscapes of adult... pgx:TCGA-LAML Acute Myeloid Leukemia c2240545-852e-48a5-a8e4-4095bba73d74 Primary Blood Derived Cancer - Peripheral Blood NCIT:C27753 Acute Myeloid Leukemia Not Otherwise Specified pgx:icdom-98613 Acute myeloid leukemia, NOS pgx:icdot-C42.1 Bone marrow NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002371 bone marrow P60Y1M0D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhp5 pgxind-kftx3fg1 pgxcs-kftvwr29 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma a1dddbed-c780-412a-b563-914f71e5c75d Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P46Y11M8D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhpa pgxind-kftx3fg7 pgxcs-kftvwr3o 25155756 Davis CF, Ricketts CJ et al. (2014): The somatic genomic landscape of chromophobe... pgx:TCGA-KICH Chromophobe Renal Cell Carcinoma f8a7da9a-3675-49c1-a24a-57eca3ccc488 Primary Tumor NCIT:C4146 Chromophobe Renal Cell Carcinoma pgx:icdom-83173 Renal cell carcinoma, chromophobe type pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P49Y8M29D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhpc pgxind-kftx3fg9 pgxcs-kftvwr46 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma 58f191cf-3c24-4d57-8a50-f7b7ec8f175d Primary Tumor NCIT:C2919 Prostate Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P54Y3M3D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhpg pgxind-kftx3fgd pgxcs-kftvwr55 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 73479b59-8a67-45be-aaa5-8ba6770a6d4c Primary Tumor NCIT:C4833 Oral Cavity Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C06.0 Cheek mucosa NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0006956 buccal mucosa P78Y4M25D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhph pgxind-kftx3fgf pgxcs-kftvwr5m 29898407 Shen H, Shih J, Hollern DP et al. (2018): Integrated Molecular Characterization of Testicular Germ... pgx:TCGA-TGCT Testicular Germ Cell Cancer b25f3eaf-ad71-42ab-950a-bf1613218db0 Primary Tumor NCIT:C9309 Seminoma pgx:icdom-90613 Seminoma, NOS pgx:icdot-C62.9 Testis, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000473 testis P39Y2M8D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhpj pgxind-kftx3fgh pgxcs-kftvwr64 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 9aae154c-ffe9-4e86-9111-903b55de9228 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P64Y10M8D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhpm pgxind-kftx3fgl pgxcs-kftvwr74 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma 96790c2c-2e6e-487f-a575-b9f1252ce972 Primary Tumor NCIT:C2919 Prostate Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P57Y7M30D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhpq pgxind-kftx3fgp pgxcs-kftvwr83 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 6407b3ab-d159-4700-8e6b-d460411643ac Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0000310 breast P58Y0M13D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhpr pgxind-kftx3fgr pgxcs-kftvwr8k 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 1152ad19-6fb1-4dfe-af73-b74323a47ac7 Primary Tumor NCIT:C3771 Lobular Breast Carcinoma pgx:icdom-85203 Lobular carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0000310 breast P69Y9M0D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhpu pgxind-kftx3fgv pgxcs-kftvwr9k 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma aeb379d5-b157-4bce-82c5-0cd0077db01f Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.0 Trigone of bladder NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0001255 urinary bladder P78Y6M0D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhpw pgxind-kftx3fgx pgxcs-kftvwra2 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 9678d418-487a-4cd9-99dd-26ba1d997bfc Primary Tumor NCIT:C9159 Diffuse Gastric Adenocarcinoma pgx:icdom-81453 Carcinoma, diffuse type pgx:icdot-C16.2 Body of stomach NCIT:C27978 Stage IIIB EFO:0009656 neoplastic sample UBERON:0001161 body of stomach P70Y5M17D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhpy pgxind-kftx3fgz pgxcs-kftvwrak 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma b6104862-f135-46a7-86a4-1e12b96386e6 Primary Tumor NCIT:C3099 Hepatocellular Carcinoma pgx:icdom-81703 Hepatocellular carcinoma, NOS pgx:icdot-C22.0 Liver NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002107 liver P74Y2M13D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhq1 pgxind-kftx3fh3 pgxcs-kftvwrbi 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 89811300-8202-4a82-8353-5b2b2b2ecfd4 Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.0 Cecum NCIT:C27978 Stage IIIB EFO:0009656 neoplastic sample UBERON:0000314 cecum mucosa P84Y7M13D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhq3 pgxind-kftx3fh5 pgxcs-kftvwrc0 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 64668aa0-dde5-4534-8cd0-378881e4a4e4 Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.9 Bladder, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0018707 bladder organ P65Y11M18D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhq9 pgxind-kftx3fhd pgxcs-kftvwrdx 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma 942b676c-ccfd-4005-a564-c48f558d5d3b Primary Tumor NCIT:C9477 Anaplastic Astrocytoma pgx:icdom-94013 Astrocytoma, anaplastic pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P45Y7M17D EFO:0030041 dead (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhqd pgxind-kftx3fhh pgxcs-kftvwrev 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma e0630a0d-d4aa-4c20-87ea-441ea60e6cfe Primary Tumor NCIT:C3771 Lobular Breast Carcinoma pgx:icdom-85203 Lobular carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0000310 breast P61Y7M3D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhqg pgxind-kftx3fhl pgxcs-kftvwrfu 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 37f5444f-a58d-4899-a11b-9c09ecd357fc Primary Tumor NCIT:C9159 Diffuse Gastric Adenocarcinoma pgx:icdom-81453 Carcinoma, diffuse type pgx:icdot-C16.2 Body of stomach NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0001161 body of stomach P69Y9M29D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhqk pgxind-kftx3fhp pgxcs-kftvwrgt 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma 72a5cc0b-0035-489e-949c-e7e085df36e2 Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P69Y7M1D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhql pgxind-kftx3fhr pgxcs-kftvwrha 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme f5e8e4b1-a779-46d6-bbaa-8afdd96f48df Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P66Y0M27D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhqn pgxind-kftx3fht pgxcs-kftvwrhr::pgxcs-kftvwukp 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 7c606f64-69a1-465c-9f4e-2eb1ebeda5d7 Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27976 Stage IB EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P72Y3M25D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhqq pgxind-kftx3fhx pgxcs-kftvwriq 26091043 Cancer Genome Atlas Network. (2015) Genomic Classification of Cutaneous Melanoma. pgx:TCGA-SKCM Skin Cutaneous Melanoma b91f81ea-8be6-4b98-b87e-2cc307c4bc13 Metastatic NCIT:C8711 Non-Cutaneous Melanoma pgx:icdom-87203 Malignant melanoma, NOS pgx:icdot-C77.0 Lymph nodes of head, face and neck NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0015870 lymph node of head P48Y6M16D EFO:0030041 dead (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhqs pgxind-kftx3fhz pgxcs-kftvwrj8 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma 42a100c4-2f25-4c92-bf89-5dc343f90df7 Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.3 Lower lobe, lung NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0008949 lower lobe of lung P62Y9M29D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhqv pgxind-kftx3fi3 pgxcs-kftvwrk8 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma bf4fc4a5-ae1e-4363-a440-a841464ae81a Primary Tumor NCIT:C3158 Leiomyosarcoma pgx:icdom-88903 Leiomyosarcoma, NOS pgx:icdot-C48.0 Retroperitoneum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003693 retroperitoneal space P56Y8M5D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhqx pgxind-kftx3fi5 pgxcs-kftvwrkq 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 3ab5e7ea-fc93-4a73-b43d-c3c74ad48bdb Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P54Y5M25D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhqz pgxind-kftx3fi7 pgxcs-kftvwrl9 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma bbf7c533-2058-4f01-ba33-35efceac3f1c Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P59Y11M22D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhr0 pgxind-kftx3fi9 pgxcs-kftvwrlr 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 5559a7ea-5db7-4af8-b491-24bb9871b89d Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0000310 breast P51Y4M9D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhr2 pgxind-kftx3fib pgxcs-kftvwrm9 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma 6715e5bf-1653-4bf6-ba96-149574b3b711 Primary Tumor NCIT:C5596 Prostate Acinar Adenocarcinoma pgx:icdom-85503 Acinar cell carcinoma pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P66Y9M1D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhr5 pgxind-kftx3fif pgxcs-kftvwrn7 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma cfe0f0e4-d8bf-40ce-99f1-2bf99ceca18b Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.3 Lower lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008949 lower lobe of lung P70Y9M28D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhr8 pgxind-kftx3fij pgxcs-kftvwro7 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma ad642ae4-7845-4f49-91ce-75a94e3bcbc2 Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P55Y5M27D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhrc pgxind-kftx3fin pgxcs-kftvwrp5 26091043 Cancer Genome Atlas Network. (2015) Genomic Classification of Cutaneous Melanoma. pgx:TCGA-SKCM Skin Cutaneous Melanoma 09ee780c-e3de-4638-88a7-879de8017cba Metastatic NCIT:C8711 Non-Cutaneous Melanoma pgx:icdom-87203 Malignant melanoma, NOS pgx:icdot-C49.6 Connective, subcutaneous and other soft tissues of trunk NOS NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0003586 trunk connective tissue P79Y10M7D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhrd pgxind-kftx3fip pgxcs-kftvwrpm 27165744 Zheng S, Cherniack AD et al. (2016): Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.... pgx:TCGA-ACC Adrenocortical Carcinoma 98650d6c-1eae-4a75-9afc-7785229e1d99 Primary Tumor NCIT:C9325 Adrenal Cortex Carcinoma pgx:icdom-83703 Adrenal cortical carcinoma pgx:icdot-C74.0 Cortex of adrenal gland NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001235 adrenal cortex P26Y5M18D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhrh pgxind-kftx3fit pgxcs-kftvwrql 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 2cd62676-762c-461d-b111-1f81e7cd5877 Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.9 Bladder, NOS NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0018707 bladder organ P53Y4M17D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhrm pgxind-kftx3fiz pgxcs-kftvwrs1 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma 9e23e7d4-3e17-4144-8c4b-5671c7a20816 Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002113 kidney P75Y1M9D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhrz pgxind-kftx3fjd pgxcs-kftvwrvv 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme 7d7dad3a-210a-4131-83ca-69437fd4002c Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P52Y7M24D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhs5 pgxind-kftx3fjl pgxcs-kftvwrxs 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 92058c44-a484-4e08-b1fe-dfe2f03a0aa1 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0000310 breast P60Y11M28D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhse pgxind-kftx3fjv pgxcs-kftvws06 27165744 Zheng S, Cherniack AD et al. (2016): Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.... pgx:TCGA-ACC Adrenocortical Carcinoma 6eebc241-9e55-4520-bb4e-73e20d25726b Primary Tumor NCIT:C9325 Adrenal Cortex Carcinoma pgx:icdom-83703 Adrenal cortical carcinoma pgx:icdot-C74.0 Cortex of adrenal gland NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0001235 adrenal cortex P49Y10M11D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhsf pgxind-kftx3fjx pgxcs-kftvws0o 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma 5c575ffb-c093-408f-8cba-bf3c7e6e4609 Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P37Y9M26D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhsh pgxind-kftx3fjz pgxcs-kftvws15 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma 9d09c013-2149-4d02-b479-1bb537fcf826 Primary Tumor NCIT:C4105 Keratinizing Squamous Cell Carcinoma pgx:icdom-80713 Squamous cell carcinoma, keratinizing, NOS pgx:icdot-C34.3 Lower lobe, lung NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0008949 lower lobe of lung P74Y0M20D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhsj pgxind-kftx3fk1 pgxcs-kftvws1n 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma d463f9a9-109e-40a8-8ee9-d16545b0c151 Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.0 Cecum NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0000314 cecum mucosa P72Y4M18D EFO:0030041 dead (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhsq pgxind-kftx3fk9 pgxcs-kftvws3k::pgxcs-kftvyjlm 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma 1bf5ea0f-6279-4278-a7d6-4b17d479283a Primary Tumor NCIT:C3158 Leiomyosarcoma pgx:icdom-88903 Leiomyosarcoma, NOS pgx:icdot-C48.0 Retroperitoneum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003693 retroperitoneal space P82Y3M0D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhsr pgxind-kftx3fkb pgxcs-kftvws41 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma 29ef7722-025a-458b-aa60-1ca9c3e70ada Primary Tumor NCIT:C3099 Hepatocellular Carcinoma pgx:icdom-81703 Hepatocellular carcinoma, NOS pgx:icdot-C22.0 Liver NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0002107 liver P45Y9M21D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhht5 pgxind-kftx3fkp pgxcs-kftvws9y 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma e4a19b22-ced3-4123-863d-2cde750226ee Primary Tumor NCIT:C4247 Undifferentiated Pleomorphic Sarcoma pgx:icdom-88303 Malignant fibrous histiocytoma pgx:icdot-C49.2 Connective, subcutaneous and other soft tissues of lower limb and hip NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003576 hip connective tissue P65Y0M6D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhht7 pgxind-kftx3fkr pgxcs-kftvwsag 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma cd8ace8b-2a7d-4de9-82ad-bbae2d028df9 Primary Tumor NCIT:C2919 Prostate Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P56Y11M15D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhht8 pgxind-kftx3fkt pgxcs-kftvwsax 28162975 Fishbein L, Leshchiner I et al. (2017): Comprehensive Molecular Characterization of Pheochromocytoma and... pgx:TCGA-PCPG Paraganglioma and Pheochromocytoma a42bf8a2-c4bd-4bf6-80d2-e60fb86bff7a Primary Tumor NCIT:C3326 Adrenal Gland Pheochromocytoma pgx:icdom-87000 Pheochromocytoma, NOS pgx:icdot-C74.9 Adrenal gland, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002369 adrenal gland P19Y10M3D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhta pgxind-kftx3fkv pgxcs-kftvwsbf 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 409382c9-7fca-46e7-8862-a5293c245442 Primary Tumor NCIT:C4648 Tongue Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C02.9 Tongue, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001723 tongue P68Y11M3D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhtf pgxind-kftx3fl1 pgxcs-kftvwscw 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma 76a6f76d-f33e-4b4a-b0ee-fb863345f194 Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P18Y6M12D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhti pgxind-kftx3fl5 pgxcs-kftvwsdu 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma f5495789-2c61-42f2-b6b6-a14e00d2f985 Primary Tumor NCIT:C4028 Cervical Squamous Cell Carcinoma, Not Otherwise Specified pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P49Y5M17D EFO:0030041 dead (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhtk pgxind-kftx3fl7 pgxcs-kftvwsec 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma f3c568ae-ad12-4155-a652-8e16e5276bda Primary Tumor NCIT:C4044 Laryngeal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C32.9 Larynx, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001737 larynx P61Y1M6D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhtm pgxind-kftx3fl9 pgxcs-kftvwset 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma c55bc8a8-b47b-4455-8c77-532c0eef98cc Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P63Y0M28D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhtp pgxind-kftx3fld pgxcs-kftvwsfs 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 31f775b7-5b7b-444a-87ad-daac3eb9a4e6 Primary Tumor NCIT:C9157 Gastric Intestinal Type Adenocarcinoma pgx:icdom-81443 Adenocarcinoma, intestinal type pgx:icdot-C16.3 Gastric antrum NCIT:C27978 Stage IIIB EFO:0009656 neoplastic sample UBERON:0001165 pyloric antrum P72Y9M17D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhtr pgxind-kftx3flf pgxcs-kftvwsga 29100075 Cancer Genome Atlas Research Network. Electronic address: elizabeth.demicco@sinaihealthsystem.ca, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrated Genomic Characterization of... pgx:TCGA-SARC Sarcoma 4a0e20e2-81e5-4950-a4d1-2d28d2f1ae57 Primary Tumor NCIT:C3704 Dedifferentiated Liposarcoma pgx:icdom-88583 Dedifferentiated liposarcoma pgx:icdot-C48.1 Specified parts of peritoneum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0003688 omentum P67Y5M3D EFO:0030041 dead (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhtu pgxind-kftx3flj pgxcs-kftvwsh9 18772890 Cancer Genome Atlas Research Network. (2008): Comprehensive genomic characterization defines human glioblastoma... pgx:TCGA-GBM Glioblastoma Multiforme 681395f8-8da0-40aa-ab40-3139a166819f Primary Tumor NCIT:C3058 Glioblastoma pgx:icdom-94403 Glioblastoma, NOS pgx:icdot-C71.9 Brain, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000955 brain P57Y6M28D EFO:0030041 dead (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhu0 pgxind-kftx3flr pgxcs-kftvwsj5 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 89b2a25d-6626-4ca8-9dfb-4b8ac8dda1de Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.1 Dome of bladder NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0006082 fundus of urinary bladder P59Y1M20D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhu2 pgxind-kftx3flt pgxcs-kftvwsjn 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma f5a7f638-f35d-46a2-af49-3ffef7cbec47 Primary Tumor NCIT:C65173 Non-Keratinizing Large Cell Squamous Cell Carcinoma pgx:icdom-80723 Squamous cell carcinoma, large cell, nonkeratinizing, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P46Y3M1D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhu8 pgxind-kftx3flz pgxcs-kftvwsl3 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma a7347072-546c-4370-9214-96a17a713b27 Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.2 Middle lobe, lung NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0008955 middle lobe of lung P70Y7M10D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhug pgxind-kftx3fm9 pgxcs-kftvwsnh 28810145 Robertson AG, Shih J et al. (2017): Integrative Analysis Identifies Four Molecular and... pgx:TCGA-UVM Uveal Melanoma 025977a6-91d8-449c-929e-a064e31fdda4 Primary Tumor NCIT:C66756 Mixed Epithelioid and Spindle Cell Melanoma pgx:icdom-87703 Mixed epithelioid and spindle cell melanoma pgx:icdot-C69.8 Overlapping lesion of eye and adnexa NCIT:C27978 Stage IIIB EFO:0009656 neoplastic sample UBERON:0035639 ocular adnexa P35Y1M25D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhui pgxind-kftx3fmb pgxcs-kftvwsnz 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 0791e7aa-e97c-4dd0-9615-09ec7090f684 Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.3 Lower lobe, lung NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0008949 lower lobe of lung P63Y1M25D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhun pgxind-kftx3fmh pgxcs-kftvwspf 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma e693f584-7be4-4319-a49d-d6e9e4ef79bb Primary Tumor NCIT:C9477 Anaplastic Astrocytoma pgx:icdom-94013 Astrocytoma, anaplastic pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P46Y5M28D EFO:0030041 dead (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhuo pgxind-kftx3fmj pgxcs-kftvwspw 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 75b242d6-392c-478f-b787-9e1da640ac33 Primary Tumor NCIT:C7383 Bladder Papillary Urothelial Carcinoma pgx:icdom-81303 Papillary transitional cell carcinoma pgx:icdot-C67.4 Posterior wall of bladder NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001256 wall of urinary bladder P80Y7M23D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhus pgxind-kftx3fmn pgxcs-kftvwsqu 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma d018cd44-6b01-44f2-9181-81153225aab8 Primary Tumor NCIT:C129857 Gingival Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C03.9 Gum, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001828 gingiva P56Y8M5D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhuu pgxind-kftx3fmp pgxcs-kftvwsrb 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma d2aaf939-ecde-499c-b301-134d1a9dcc5a Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P74Y2M28D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhux pgxind-kftx3fmt pgxcs-kftvwssa 30322867 Hmeljak J, Sanchez-Vega F et al. (2018): Integrative Molecular Characterization of Malignant Pleural... pgx:TCGA-MESO Mesothelioma 3452e57d-1fd2-49b5-8eaa-b4f30b839cf8 Primary Tumor NCIT:C7985 Epithelioid Mesothelioma pgx:icdom-90523 Epithelioid mesothelioma, malignant pgx:icdot-C38.4 Pleura, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0000977 pleura P69Y9M9D EFO:0030041 dead (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhv2 pgxind-kftx3fmz pgxcs-kftvwstp 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma c216cce6-3e13-466e-942d-348f9f803ab2 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0000310 breast P74Y2M16D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhv4 pgxind-kftx3fn1 pgxcs-kftvwsu7 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 482c1c70-ae61-45da-b1c0-4303abdda2cd Primary Tumor NCIT:C3512 Lung Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27975 Stage IA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P72Y0M4D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhv7 pgxind-kftx3fn5 pgxcs-kftvwsv5 28052061 Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health. (2017): Integrated genomic characterization of oesophageal carcinoma.... pgx:TCGA-ESCA Esophageal Carcinoma f60aaa21-7d4e-4988-94bd-69f0929560a5 Primary Tumor NCIT:C4024 Esophageal Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C15.4 Middle third of esophagus NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0013474 middle part of esophagus P66Y8M28D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhv9 pgxind-kftx3fn7 pgxcs-kftvwsvn 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma ca3c9a05-88b7-4d99-abd5-fc557e3929a0 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P49Y4M18D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhva pgxind-kftx3fn9 pgxcs-kftvwsw5 26091043 Cancer Genome Atlas Network. (2015) Genomic Classification of Cutaneous Melanoma. pgx:TCGA-SKCM Skin Cutaneous Melanoma 75b7799b-4aa0-475c-b92a-e7a1c9419645 Metastatic NCIT:C3510 Cutaneous Melanoma pgx:icdom-87203 Malignant melanoma, NOS pgx:icdot-C44.9 Skin, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0000014 zone of skin P55Y10M5D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhvj pgxind-kftx3fnj pgxcs-kftvwsyj 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma 50ed72f4-6fd5-4c63-8fd7-5147d11bb649 Primary Tumor NCIT:C60781 Astrocytoma pgx:icdom-94003 Astrocytoma, NOS pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P62Y3M1D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhvk pgxind-kftx3fnl pgxcs-kftvwsz0 25155756 Davis CF, Ricketts CJ et al. (2014): The somatic genomic landscape of chromophobe... pgx:TCGA-KICH Chromophobe Renal Cell Carcinoma 9ee9498b-54d7-4d35-acf7-45b537b87f9b Primary Tumor NCIT:C4146 Chromophobe Renal Cell Carcinoma pgx:icdom-83173 Renal cell carcinoma, chromophobe type pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P57Y5M0D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhvm pgxind-kftx3fnn pgxcs-kftvwszi 28622513 Cancer Genome Atlas Research Network. Electronic address: wheeler@bcm.edu, Cancer Genome Atlas Research Network. (2017): Comprehensive and Integrative Genomic Characterization of... pgx:TCGA-LIHC Hepatocellular Carcinoma 97843db5-32bd-4b54-8397-d5315d0922ec Primary Tumor NCIT:C3828 Combined Hepatocellular Carcinoma and Cholangiocarcinoma pgx:icdom-81803 Combined hepatocellular carcinoma and cholangiocarcinoma pgx:icdot-C22.0 Liver NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002107 liver P64Y10M18D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhvn pgxind-kftx3fnp pgxcs-kftvwszz 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma c281d8eb-0aaf-409c-b8d1-5681c8dc27be Primary Tumor NCIT:C43584 Rectosigmoid Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.7 Sigmoid colon NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0001155 colon P34Y10M13D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhvp pgxind-kftx3fnr pgxcs-kftvwt0h 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma eaae1a05-7d7e-406a-a02b-282a8b66f95c Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P29Y11M28D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhvr pgxind-kftx3fnt pgxcs-kftvwt0y 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 81111396-3a9d-4ef6-810c-a20280e667a6 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P69Y9M3D EFO:0030049 alive (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhvw pgxind-kftx3fnz pgxcs-kftvwt2f 28162975 Fishbein L, Leshchiner I et al. (2017): Comprehensive Molecular Characterization of Pheochromocytoma and... pgx:TCGA-PCPG Paraganglioma and Pheochromocytoma 6e598abc-58cc-4639-bb67-d6f5c11d4598 Primary Tumor NCIT:C3326 Adrenal Gland Pheochromocytoma pgx:icdom-87000 Pheochromocytoma, NOS pgx:icdot-C74.9 Adrenal gland, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002369 adrenal gland P28Y6M26D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhw1 pgxind-kftx3fo5 pgxcs-kftvwt3v 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 93d283a7-e866-4f23-81f7-942dee5009b8 Primary Tumor NCIT:C4648 Tongue Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C02.9 Tongue, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0001723 tongue P61Y0M26D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhw4 pgxind-kftx3fo9 pgxcs-kftvwt4x 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma 0767dafb-fdd8-4654-9677-16b79bc78f9d Primary Tumor NCIT:C9477 Anaplastic Astrocytoma pgx:icdom-94013 Astrocytoma, anaplastic pgx:icdot-C71.4 Occipital lobe NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002021 occipital lobe P38Y3M19D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhw6 pgxind-kftx3fob pgxcs-kftvwt5e 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma c94dd7a5-dd58-4702-a7d1-8199d3f8c9cc Primary Tumor NCIT:C6287 Endometrial Endometrioid Adenocarcinoma pgx:icdom-83803 Endometrioid adenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P57Y9M13D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhwa pgxind-kftx3fof pgxcs-kftvwt6e 30322867 Hmeljak J, Sanchez-Vega F et al. (2018): Integrative Molecular Characterization of Malignant Pleural... pgx:TCGA-MESO Mesothelioma 28f5e961-edde-4bf3-a6a4-65332a3720b1 Primary Tumor NCIT:C45665 Pleural biphasic mesothelioma pgx:icdom-90533 Mesothelioma, biphasic, malignant pgx:icdot-C38.4 Pleura, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0000977 pleura P78Y3M9D EFO:0030041 dead (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhwb pgxind-kftx3foh pgxcs-kftvwt6w 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma dade6383-329a-4443-bdef-939c34d8c5a0 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P48Y11M3D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhwd pgxind-kftx3foj pgxcs-kftvwt7e 23792563 Cancer Genome Atlas Research Network. (2013): Comprehensive molecular characterization of clear cell... pgx:TCGA-KIRC Clear Cell Renal Cell Carcinoma ae052a98-d8a5-431f-9632-df4dc22ac113 Primary Tumor NCIT:C4033 Clear Cell Renal Cell Carcinoma pgx:icdom-83103 Clear cell adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0002113 kidney P76Y3M6D EFO:0030049 alive (follow-up status) Boston United States of America USA -71.06::42.36 pgxbs-kftvhhwe pgxind-kftx3fol pgxcs-kftvwt7w 26536169 Cancer Genome Atlas Research Network, Linehan WM, Spellman et al. (2016): Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma. pgx:TCGA-KIRP Papillary Renal Cell Carcinoma b0e1ee18-56d8-49e9-9e6c-210b67942f05 Primary Tumor NCIT:C6975 Papillary Renal Cell Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C64.9 Kidney, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002113 kidney P50Y7M22D EFO:0030049 alive (follow-up status) None None XXX 0.0::0.0 pgxbs-kftvhhwi pgxind-kftx3fop pgxcs-kftvwt8w 27165744 Zheng S, Cherniack AD et al. (2016): Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.... pgx:TCGA-ACC Adrenocortical Carcinoma efbcd3a5-723a-4361-9769-c01336f5f22d Primary Tumor NCIT:C9003 Adrenal Cortex Adenoma pgx:icdom-83701 Adrenal cortical adenoma, borderline malignancy pgx:icdot-C74.0 Cortex of adrenal gland NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001235 adrenal cortex P37Y1M14D EFO:0030049 alive (follow-up status) Houston United States of America USA -95.36::29.76 pgxbs-kftvhhwj pgxind-kftx3for pgxcs-kftvwt9e 22960745 Cancer Genome Atlas Research Network. (2012): Comprehensive genomic characterization of squamous cell... pgx:TCGA-LUSC Lung Squamous Cell Carcinoma 2ffbc6b0-c56b-474f-add4-747caa6de728 Primary Tumor NCIT:C3493 Squamous Cell Lung Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C34.1 Upper lobe, lung NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0008948 upper lobe of lung P75Y7M25D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhwp pgxind-kftx3fov pgxcs-kftvwtau 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma 8673d69f-530e-4c33-ba96-25cd44adea7b Primary Tumor NCIT:C6287 Endometrial Endometrioid Adenocarcinoma pgx:icdom-83803 Endometrioid adenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P67Y6M12D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhws pgxind-kftx3foz pgxcs-kftvwtbt 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 7554a84f-573c-4de9-9cda-e60674aea5fa Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.2 Ascending colon NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0001156 ascending colon P68Y10M1D EFO:0030041 dead (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhwu pgxind-kftx3fp1 pgxcs-kftvwtca 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma c48c8731-71c2-4bfd-a2d8-6f1ffa0dbd20 Primary Tumor NCIT:C3288 Oligodendroglioma pgx:icdom-94503 Oligodendroglioma, NOS pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P48Y8M24D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhwz pgxind-kftx3fp7 pgxcs-kftvwtfs 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 46b0a695-f283-4623-a78b-954753e8ee62 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27967 Stage IIA EFO:0009656 neoplastic sample UBERON:0000310 breast P66Y3M21D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhx1 pgxind-kftx3fp9 pgxcs-kftvwtgb 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma 63130e8f-11de-44bc-8b2c-a8ea2613c3a5 Primary Tumor NCIT:C126594 Follicular Variant Thyroid Gland Papillary Carcinoma pgx:icdom-83403 Papillary carcinoma, follicular variant pgx:icdot-C73.9 Thyroid gland NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P42Y10M9D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhx2 pgxind-kftx3fpb pgxcs-kftvwtgs 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 8cf68bb1-5966-40cd-a038-e9e91e608766 Primary Tumor NCIT:C7383 Bladder Papillary Urothelial Carcinoma pgx:icdom-81303 Papillary transitional cell carcinoma pgx:icdot-C67.9 Bladder, NOS NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0018707 bladder organ P75Y2M3D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhx6 pgxind-kftx3fpe pgxcs-kftvwthr 25417114 Cancer Genome Atlas Research Network. (2014): Integrated genomic characterization of papillary thyroid... pgx:TCGA-THCA Thyroid Papillary Carcinoma 51fe3d91-4914-49fc-b69c-990c1dd09e1c Primary Tumor NCIT:C4035 Thyroid Gland Papillary Carcinoma pgx:icdom-82603 Papillary adenocarcinoma, NOS pgx:icdot-C73.9 Thyroid gland NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0002046 thyroid gland P55Y8M28D EFO:0030049 alive (follow-up status) Michigan City United States of America USA -86.9::41.71 pgxbs-kftvhhx9 pgxind-kftx3fpi pgxcs-kftvwtip 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 216c9136-673a-4e87-8537-daf1e4fbf394 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P57Y2M21D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhxb pgxind-kftx3fpk pgxcs-kftvwtj7 28052061 Cancer Genome Atlas Research Network, Analysis Working Group: Asan University, BC Cancer Agency, Brigham and Women’s Hospital, Broad Institute, Brown University, Case Western Reserve University, Dana-Farber Cancer Institute, Duke University, Greater Poland Cancer Centre, Harvard Medical School, Institute for Systems Biology, KU Leuven, Mayo Clinic, Memorial Sloan Kettering Cancer Center, National Cancer Institute, Nationwide Children’s Hospital, Stanford University, University of Alabama, University of Michigan, University of North Carolina, University of Pittsburgh, University of Rochester, University of Southern California, University of Texas MD Anderson Cancer Center, University of Washington, Van Andel Research Institute, Vanderbilt University, Washington University, Genome Sequencing Center: Broad Institute, Washington University in St. Louis, Genome Characterization Centers: BC Cancer Agency, Broad Institute, Harvard Medical School, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of North Carolina, University of Southern California Epigenome Center, University of Texas MD Anderson Cancer Center, Van Andel Research Institute, Genome Data Analysis Centers: Broad Institute, Brown University:, Harvard Medical School, Institute for Systems Biology, Memorial Sloan Kettering Cancer Center, University of California Santa Cruz, University of Texas MD Anderson Cancer Center, Biospecimen Core Resource: International Genomics Consortium, Research Institute at Nationwide Children’s Hospital, Tissue Source Sites: Analytic Biologic Services, Asan Medical Center, Asterand Bioscience, Barretos Cancer Hospital, BioreclamationIVT, Botkin Municipal Clinic, Chonnam National University Medical School, Christiana Care Health System, Cureline, Duke University, Emory University, Erasmus University, Indiana University School of Medicine, Institute of Oncology of Moldova, International Genomics Consortium, Invidumed, Israelitisches Krankenhaus Hamburg, Keimyung University School of Medicine, Memorial Sloan Kettering Cancer Center, National Cancer Center Goyang, Ontario Tumour Bank, Peter MacCallum Cancer Centre, Pusan National University Medical School, Ribeirão Preto Medical School, St. Joseph’s Hospital &Medical Center, St. Petersburg Academic University, Tayside Tissue Bank, University of Dundee, University of Kansas Medical Center, University of Michigan, University of North Carolina at Chapel Hill, University of Pittsburgh School of Medicine, University of Texas MD Anderson Cancer Center, Disease Working Group: Duke University, Memorial Sloan Kettering Cancer Center, National Cancer Institute, University of Texas MD Anderson Cancer Center, Yonsei University College of Medicine, Data Coordination Center: CSRA Inc., Project Team: National Institutes of Health. (2017): Integrated genomic characterization of oesophageal carcinoma.... pgx:TCGA-ESCA Esophageal Carcinoma c5bfe9a0-c788-4c19-943b-6fa77d75b765 Primary Tumor NCIT:C4025 Esophageal Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C15.5 Lower third of esophagus NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0013473 lower esophagus P57Y10M9D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhxe pgxind-kftx3fpo pgxcs-kftvwtk7 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma 8a78f37c-8bc5-4a51-bb76-e77ded648289 Primary Tumor NCIT:C3778 Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P56Y4M18D EFO:0030041 dead (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhxo pgxind-kftx3fpz pgxcs-kftvwtn7 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma a07e086c-1d2d-4d92-a663-ecd7ea4dbd73 Primary Tumor NCIT:C4648 Tongue Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C02.9 Tongue, NOS NCIT:C27966 Stage I EFO:0009656 neoplastic sample UBERON:0001723 tongue P77Y3M5D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhxr pgxind-kftx3fq3 pgxcs-kftvwto5 23636398 Cancer Genome Atlas Research Network, Kandoth C et al. (2013): Integrated genomic characterization of endometrial carcinoma.... pgx:TCGA-UCEC Uterine Corpus Endometrioid Carcinoma 1738b7d6-c860-449a-aae9-065ef65a149b Primary Tumor NCIT:C6287 Endometrial Endometrioid Adenocarcinoma pgx:icdom-83803 Endometrioid adenocarcinoma, NOS pgx:icdot-C54.1 Endometrium NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001295 endometrium P65Y11M22D EFO:0030049 alive (follow-up status) New York City United States of America USA -74.01::40.71 pgxbs-kftvhhxt pgxind-kftx3fq5 pgxcs-kftvwton 29641966 Schmitz R, Wright GW, Huang DW, Johnson CA et al. (2018) Genetics and Pathogenesis of Diffuse Large B-Cell Lymphoma. pgx:TCGA-DLBC Diffuse large B cell lymphoma 94a5c9bd-6ecd-4c53-8898-441c0baec504 Primary Tumor NCIT:C8851 Diffuse Large B-Cell Lymphoma pgx:icdom-96803 Malignant lymphoma, large B-cell, diffuse, NOS pgx:icdot-C17.1 Jejunum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002115 jejunum P40Y3M21D EFO:0030041 dead (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhxx pgxind-kftx3fqa pgxcs-kftvwtpm 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 69125f72-2011-4b8a-a450-1eae83b74266 Primary Tumor NCIT:C43584 Rectosigmoid Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.7 Sigmoid colon NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0001155 colon P54Y2M15D EFO:0030041 dead (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhxy pgxind-kftx3fqc pgxcs-kftvwtq5 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 0a95bd32-539e-43f3-9694-a7d033a6fa84 Primary Tumor NCIT:C9159 Diffuse Gastric Adenocarcinoma pgx:icdom-81453 Carcinoma, diffuse type pgx:icdot-C16.2 Body of stomach NCIT:C27982 Stage IIIC EFO:0009656 neoplastic sample UBERON:0001161 body of stomach P77Y5M25D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhy0 pgxind-kftx3fqe pgxcs-kftvwtqn 25631445 Cancer Genome Atlas Network. (2015): Comprehensive genomic characterization of head and... pgx:TCGA-HNSC Head and Neck Squamous Cell Carcinoma 73934f12-44bf-4e1e-85f8-284110e7bcc5 Primary Tumor NCIT:C4041 Floor of Mouth Squamous Cell Carcinoma pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C04.9 Floor of mouth, NOS NCIT:C27979 Stage IVA EFO:0009656 neoplastic sample UBERON:0003679 mouth floor P67Y4M29D EFO:0030041 dead (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhy8 pgxind-kftx3fqo pgxcs-kftvwtt6 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma bb5ef93f-c950-482b-b77d-4b0974c1b57d Primary Tumor NCIT:C4028 Cervical Squamous Cell Carcinoma, Not Otherwise Specified pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P27Y9M23D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhya pgxind-kftx3fqq pgxcs-kftvwttn 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma faf406a4-d3d4-4ff5-8a3b-86ecbc6802ab Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary EFO:0030049 alive (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhyd pgxind-kftx3fqu pgxcs-kftvwtuo 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 45319218-5bae-486a-a4aa-580ff5f0e931 Primary Tumor NCIT:C4017 Ductal Breast Carcinoma pgx:icdom-85003 Infiltrating duct carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0000310 breast P50Y0M0D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhyg pgxind-kftx3fqy pgxcs-kftvwtvn 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma af776424-fdcb-4525-83e4-bb2c7129baab Primary Tumor NCIT:C3288 Oligodendroglioma pgx:icdom-94503 Oligodendroglioma, NOS pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P60Y4M1D EFO:0030049 alive (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhyl pgxind-kftx3fr4 pgxcs-kftvwtx3 29898407 Shen H, Shih J, Hollern DP et al. (2018): Integrated Molecular Characterization of Testicular Germ... pgx:TCGA-TGCT Testicular Germ Cell Cancer 8881219f-dc8c-48d4-88b9-7f8fe7ce69e9 Primary Tumor NCIT:C9309 Seminoma pgx:icdom-90613 Seminoma, NOS pgx:icdot-C62.9 Testis, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000473 testis P34Y9M3D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhyn pgxind-kftx3fr6 pgxcs-kftvwtxk 22810696 Cancer Genome Atlas Network. (2012): Comprehensive molecular characterization of human colon... pgx:TCGA-COAD Colon Adenocarcinoma 1e191eed-2238-450e-a384-26df9c569fd0 Primary Tumor NCIT:C4349 Colon Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C18.2 Ascending colon NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0001156 ascending colon P75Y10M30D EFO:0030049 alive (follow-up status) Washington United States of America USA -89.41::40.7 pgxbs-kftvhhyu pgxind-kftx3frf pgxcs-kftvwtzl 28112728 Cancer Genome Atlas Research Network, Albert Einstein College of Medicine, Analytical Biological Services, Barretos Cancer Hospital, Baylor College of Medicine, Beckman Research Institute of City of Hope, Buck Institute for Research on Aging, Canada's Michael Smith Genome Sciences Centre, Harvard Medical School, Helen F. Graham Cancer Center &Research Institute at Christiana Care Health Services, HudsonAlpha Institute for Biotechnology, ILSbio, LLC, Indiana University School of Medicine, Institute of Human Virology, Institute for Systems Biology, International Genomics Consortium, Leidos Biomedical, Massachusetts General Hospital, McDonnell Genome Institute at Washington University, Medical College of Wisconsin, Medical University of South Carolina, Memorial Sloan Kettering Cancer Center, Montefiore Medical Center, NantOmics, National Cancer Institute, National Hospital, Abuja, Nigeria, National Human Genome Research Institute, National Institute of Environmental Health Sciences, National Institute on Deafness &Other Communication Disorders, Ontario Tumour Bank, London Health Sciences Centre, Ontario Tumour Bank, Ontario Institute for Cancer Research, Ontario Tumour Bank, The Ottawa Hospital, Oregon Health &Science University, Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, SRA International, St Joseph's Candler Health System, Eli &Edythe L. Broad Institute of Massachusetts Institute of Technology &Harvard University, Research Institute at Nationwide Children's Hospital, Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, University of Bergen, University of Texas MD Anderson Cancer Center, University of Abuja Teaching Hospital, University of Alabama at Birmingham, University of California, Irvine, University of California Santa Cruz, University of Kansas Medical Center, University of Lausanne, University of New Mexico Health Sciences Center, University of North Carolina at Chapel Hill, University of Oklahoma Health Sciences Center, University of Pittsburgh, University of S�o Paulo, Ribeir �o Preto Medical School, University of Southern California, University of Washington, University of Wisconsin School of Medicine &Public Health, Van Andel Research Institute, Washington University in St Louis. (2017): Integrated genomic and molecular characterization of... pgx:TCGA-CESC Cervical Carcinoma a047fcfb-307f-4548-9ab7-2e2336ed17a2 Primary Tumor NCIT:C4028 Cervical Squamous Cell Carcinoma, Not Otherwise Specified pgx:icdom-80703 Squamous cell carcinoma, NOS pgx:icdot-C53.9 Cervix uteri NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000002 uterine cervix P54Y11M7D EFO:0030049 alive (follow-up status) Austin United States of America USA -92.97::43.67 pgxbs-kftvhhyv pgxind-kftx3frh pgxcs-kftvwu03 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma f0c5f7c0-352b-4210-960c-b05cc4c481a0 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P60Y3M2D EFO:0030049 alive (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhz2 pgxind-kftx3frp pgxcs-kftvwu20 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma eb71264d-c896-4910-bf46-d6f129b83941 Primary Tumor NCIT:C4004 Gastric Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C16.3 Gastric antrum NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001165 pyloric antrum P78Y3M27D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhzb pgxind-kftx3frx pgxcs-kftvwu4g 26061751 Cancer Genome Atlas Research Network, Brat DJ et al. (2015): Comprehensive, Integrative Genomic Analysis of Diffuse... pgx:TCGA-LGG Lower Grade Glioma 6297f224-7379-4fcd-86f7-0a2410ea5cd1 Primary Tumor NCIT:C60781 Astrocytoma pgx:icdom-94003 Astrocytoma, NOS pgx:icdot-C71.0 Cerebrum NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0001869 cerebral hemisphere P66Y4M23D EFO:0030041 dead (follow-up status) Atlanta United States of America USA -84.39::33.75 pgxbs-kftvhhzc pgxind-kftx3frz pgxcs-kftvwu4x 25079552 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular profiling of lung adenocarcinoma.... pgx:TCGA-LUAD Lung Adenocarcinoma 3073311b-5b00-4fd7-b1f6-1067d2e86564 Primary Tumor NCIT:C5649 Acinar Lung Adenocarcinoma pgx:icdom-85503 Acinar cell carcinoma pgx:icdot-C34.3 Lower lobe, lung NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0008949 lower lobe of lung P78Y10M6D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhzf pgxind-kftx3fs3 pgxcs-kftvwu5w 28162975 Fishbein L, Leshchiner I et al. (2017): Comprehensive Molecular Characterization of Pheochromocytoma and... pgx:TCGA-PCPG Paraganglioma and Pheochromocytoma 51508c41-f3cf-4cb3-9db2-42531bf7a867 Primary Tumor NCIT:C3326 Adrenal Gland Pheochromocytoma pgx:icdom-87000 Pheochromocytoma, NOS pgx:icdot-C74.9 Adrenal gland, NOS NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002369 adrenal gland P19Y9M25D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhzh pgxind-kftx3fs5 pgxcs-kftvwu6d 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma 1c0714ec-70a9-4902-bd98-8b0fb002c084 Primary Tumor NCIT:C6393 Invasive Ductal and Invasive Lobular Breast Carcinoma pgx:icdom-85223 Infiltrating duct and lobular carcinoma pgx:icdot-C50.9 Breast, NOS NCIT:C27968 Stage IIB EFO:0009656 neoplastic sample UBERON:0000310 breast P79Y9M1D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhzj pgxind-kftx3fs7 pgxcs-kftvwu6x 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma 61513da0-4eb3-4cae-bfff-7b05f3362488 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P54Y8M1D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87 pgxbs-kftvhhzm pgxind-kftx3fsb pgxcs-kftvwu7v 26544944 Cancer Genome Atlas Research Network. (2015) The Molecular Taxonomy of Primary Prostate Cancer. pgx:TCGA-PRAD Prostate Adenocarcinoma eee1828e-d25f-462b-9735-89ca2eccc7e1 Primary Tumor NCIT:C5596 Prostate Acinar Adenocarcinoma pgx:icdom-85503 Acinar cell carcinoma pgx:icdot-C61.9 Prostate gland NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0002367 prostate gland P64Y9M18D EFO:0030049 alive (follow-up status) Bethesda United States of America USA -77.1::38.98 pgxbs-kftvhhzo pgxind-kftx3fsd pgxcs-kftvwu8d 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma e01fb843-d86d-42a6-81a5-30d678a17588 Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.4 Posterior wall of bladder NCIT:C27970 Stage III EFO:0009656 neoplastic sample UBERON:0001256 wall of urinary bladder P63Y2M8D EFO:0030049 alive (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhzr pgxind-kftx3fsh pgxcs-kftvwu9c 23000897 Cancer Genome Atlas Network. (2012): Comprehensive molecular portraits of human breast... pgx:TCGA-BRCA Breast invasive carcinoma a31dec9b-3626-4cb0-8265-1425d5ce1c1e Primary Tumor NCIT:C3771 Lobular Breast Carcinoma pgx:icdom-85203 Lobular carcinoma, NOS pgx:icdot-C50.9 Breast, NOS NCIT:C27971 Stage IV EFO:0009656 neoplastic sample UBERON:0000310 breast P63Y7M0D EFO:0030049 alive (follow-up status) Chapel Hill United States of America USA -79.06::35.91 pgxbs-kftvhhzt pgxind-kftx3fsk pgxcs-kftvwu9t 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma 410ffe22-c1e2-4d31-b053-843e71e49ea9 Primary Tumor NCIT:C5473 Gastric tubular adenocarcinoma pgx:icdom-82113 Tubular adenocarcinoma pgx:icdot-C16.3 Gastric antrum NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0001165 pyloric antrum P63Y1M0D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhhzu pgxind-kftx3fsm pgxcs-kftvwuad 24476821 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of urothelial bladder... pgx:TCGA-BLCA Bladder Urothelial Carcinoma 554ae735-9991-4cb3-afe8-4951490bd709 Primary Tumor NCIT:C39851 Bladder Urothelial Carcinoma pgx:icdom-81203 Transitional cell carcinoma, NOS pgx:icdot-C67.2 Lateral wall of bladder NCIT:C28054 Stage II EFO:0009656 neoplastic sample UBERON:0001256 wall of urinary bladder P70Y0M16D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhi00 pgxind-kftx3fss pgxcs-kftvwubv 25079317 Cancer Genome Atlas Research Network. (2014): Comprehensive molecular characterization of gastric adenocarcinoma.... pgx:TCGA-STAD Gastric Adenocarcinoma c536b8df-6fe3-425e-82e8-36299a6ba2b9 Primary Tumor NCIT:C4004 Gastric Adenocarcinoma pgx:icdom-81403 Adenocarcinoma, NOS pgx:icdot-C16.2 Body of stomach NCIT:C27977 Stage IIIA EFO:0009656 neoplastic sample UBERON:0001161 body of stomach P80Y5M24D EFO:0030041 dead (follow-up status) Cambridge United States of America USA -71.11::42.38 pgxbs-kftvhi05 pgxind-kftx3fsy pgxcs-kftvwudc 21720365 Cancer Genome Atlas Research Network. (2011) Integrated genomic analyses of ovarian carcinoma. pgx:TCGA-OV Ovarian Serous Adenocarcinoma d2713ae1-4993-415c-8bb3-a69dd31ef6f5 Primary Tumor NCIT:C7978 Ovarian Serous Cystadenocarcinoma pgx:icdom-84413 Serous cystadenocarcinoma, NOS pgx:icdot-C56.9 Ovary NCIT:C92207 Stage Unknown EFO:0009656 neoplastic sample UBERON:0000992 ovary P53Y7M7D EFO:0030041 dead (follow-up status) Berkeley United States of America USA -122.27::37.87