PubMed Indexed Publications by Michael Baudis et al.

Original Publications (PubMed listed)

56.Mackay A, Burford A, Carvalho D, Izquierdo E, Fazal-Salom J, Taylor KR, Bjerke L, Clarke M, Vinci M, Nandhabalan M, Temelso S, Popov S, Molinari V, Raman P, Waanders AJ, Han HJ, Gupta S, Marshall L, Zacharoulis S, Vaidya S, Mandeville HC, Bridges LR, Martin AJ, Al-Sarraj S, Chandler C, Ng HK, Li X, Mu K, Trabelsi S, Brahim DH, Kisljakov AN, Konovalov DM, Moore AS, Carcaboso AM, Sunol M, de Torres C, Cruz O, Mora J, Shats LI, Stavale JN, Bidinotto LT, Reis RM, Entz-Werle N, Farrell M, Cryan J, Crimmins D, Caird J, Pears J, Monje M, Debily MA, Castel D, Grill J, Hawkins C, Nikbakht H, Jabado N, Baker SJ, Pfister SM, Jones DTW, Fouladi M, von Bueren AO, Baudis M, Resnick A, Jones C. Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma. Cancer Cell. 2017 Oct 9;32(4):520-537.e5. doi: 10.1016/j.ccell.2017.08.017. Epub 2017 Sep 28. PubMed 28966033  PubMed Central PMCID: PMC5637314.  
55.Ai N, Cai H, Solovan C, Baudis M. CNARA: reliability assessment for genomic copy number profiles. BMC Genomics. 2016 Oct 12;17(1):799. PubMed 27733115  PubMed Central PMCID: PMC5062840.  
54.Andersson A, Bluwstein A, Kumar N, Teloni F, Traenkle J, Baudis M, Altmeyer M, Hottiger MO. PKCα and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation. Nucleic Acids Res. 2016 Sep 19;44(16):7630-45. doi: 10.1093/nar/gkw442. Epub 2016 May 19. PubMed 27198223  PubMed Central PMCID: PMC5027479.  
53.SIB Swiss Institute of Bioinformatics Members. The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic Acids Res. 2016 Jan 4;44(D1):D27-37. doi: 10.1093/nar/gkv1310. Epub 2015 Nov 28. PubMed 26615188  PubMed Central PMCID: PMC4702916.  
52.Muff R, Rath P, Ram Kumar RM, Husmann K, Born W, Baudis M, Fuchs B. Genomic instability of osteosarcoma cell lines in culture: impact on the prediction of metastasis relevant genes. PLoS One. 2015 May 19;10(5):e0125611. doi: 10.1371/journal.pone.0125611. eCollection 2015. PubMed 25992885  PubMed Central PMCID: PMC4438062.  
51.Baderca F, Chiticariu E, Baudis M, Solovan C. Biopsying parapsoriasis: quo vadis? Are morphological stains enough or are ancillary tests needed? Rom J Morphol Embryol. 2014;55(3 Suppl):1085-92. PubMed 25607389   
50.Cai H, Gupta S, Rath P, Ai N, Baudis M. arrayMap 2014: an updated cancer genome resource. Nucleic Acids Res. 2015 Jan;43(Database issue):D825-30. doi: 10.1093/nar/gku1123. Epub 2014 Nov 26. PubMed 25428357  PubMed Central PMCID: PMC4383937.  
49.Cai H, Kumar N, Bagheri HC, von Mering C, Robinson MD, Baudis M. Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens. BMC Genomics. 2014 Jan 29;15:82. doi: 10.1186/1471-2164-15-82. PubMed 24476156  PubMed Central PMCID: PMC3909908.  
48.Cai H, Kumar N, Ai N, Gupta S, Rath P, Baudis M. Progenetix: 12 years of oncogenomic data curation. Nucleic Acids Res. 2014 Jan;42(Database issue):D1055-62. doi: 10.1093/nar/gkt1108. Epub 2013 Nov 12. PubMed 24225322  PubMed Central PMCID: PMC3965091.  
47.Krieger M, Roos A, Stendel C, Claeys KG, Sonmez FM, Baudis M, Bauer P, Bornemann A, de Goede C, Dufke A, Finkel RS, Goebel HH, Häussler M, Kingston H, Kirschner J, Medne L, Muschke P, Rivier F, Rudnik-Schöneborn S, Spengler S, Inzana F, Stanzial F, Benedicenti F, Synofzik M, Lia Taratuto A, Pirra L, Tay SK, Topaloglu H, Uyanik G, Wand D, Williams D, Zerres K, Weis J, Senderek J. SIL1 mutations and clinical spectrum in patients with Marinesco-Sjogren syndrome. Brain. 2013 Dec;136(Pt 12):3634-44. doi: 10.1093/brain/awt283. Epub 2013 Oct 30. PubMed 24176978   
46.Martin-Guerrero I, Salaverria I, Burkhardt B, Szczepanowski M, Baudis M, Bens S, de Leval L, Garcia-Orad A, Horn H, Lisfeld J, Pellissery S, Klapper W, Oschlies I, Siebert R. Recurrent loss of heterozygosity in 1p36 associated with TNFRSF14 mutations in IRF4 translocation negative pediatric follicular lymphomas. Haematologica. 2013 Aug;98(8):1237-41. doi: 10.3324/haematol.2012.073916. Epub 2013 Feb 26. PubMed 23445872  PubMed Central PMCID: PMC3729904.  
45.Bluwstein A, Kumar N, Léger K, Traenkle J, Oostrum Jv, Rehrauer H, Baudis M, Hottiger MO. PKC signaling prevents irradiation-induced apoptosis of primary human fibroblasts. Cell Death Dis. 2013 Feb 14;4:e498. doi: 10.1038/cddis.2013.15. PubMed 23412390  PubMed Central PMCID: PMC3734826.  
44.Salaverria I, Martin-Guerrero I, Burkhardt B, Kreuz M, Zenz T, Oschlies I, Arnold N, Baudis M, Bens S, García-Orad A, Lisfeld J, Schwaenen C, Szczepanowski M, Wessendorf S, Pfreundschuh M, Trümper L, Klapper W, Siebert R. High resolution copy number analysis of IRF4 translocation-positive diffuse large B-cell and follicular lymphomas. Genes Chromosomes Cancer. 2013 Feb;52(2):150-5. doi: 10.1002/gcc.22014. Epub 2012 Oct 17. PubMed 23073988   
43.Kumar N, Cai H, von Mering C, Baudis M. Specific genomic regions are differentially affected by copy number alterations across distinct cancer types, in aggregated cytogenetic data. PLoS One. 2012;7(8):e43689. doi: 10.1371/journal.pone.0043689. Epub 2012 Aug 24. PubMed 22937079  PubMed Central PMCID: PMC3427184.  
42.Beleut M, Zimmermann P, Baudis M, Bruni N, Bühlmann P, Laule O, Luu VD, Gruissem W, Schraml P, Moch H. Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome. BMC Cancer. 2012 Jul 23;12:310. doi: 10.1186/1471-2407-12-310. PubMed 22824167  PubMed Central PMCID: PMC3488567.  
41.von Bueren AO, Gerss J, Hagel C, Cai H, Remke M, Hasselblatt M, Feuerstein BG, Pernet S, Delattre O, Korshunov A, Rutkowski S, Pfister SM, Baudis M. DNA copy number alterations in central primitive neuroectodermal tumors and tumors of the pineal region: an international individual patient data meta-analysis. J Neurooncol. 2012 Sep;109(2):415-23. doi: 10.1007/s11060-012-0911-7. Epub 2012 Jul 7. PubMed 22772606   
40.Eggermann T, Spengler S, Venghaus A, Denecke B, Zerres K, Baudis M, Ensenauer R. 2p21 Deletions in hypotonia-cystinuria syndrome. Eur J Med Genet. 2012 Oct;55(10):561-3. doi: 10.1016/j.ejmg.2012.06.008. Epub 2012 Jul 17. PubMed 22766003   
39.Spengler S, Begemann M, Ortiz Brüchle N, Baudis M, Denecke B, Kroisel PM, Oehl-Jaschkowitz B, Schulze B, Raabe-Meyer G, Spaich C, Blümel P, Jauch A, Moog U, Zerres K, Eggermann T. Molecular karyotyping as a relevant diagnostic tool in children with growth retardation with Silver-Russell features. J Pediatr. 2012 Nov;161(5):933-42. doi: 10.1016/j.jpeds.2012.04.045. Epub 2012 Jun 8. PubMed 22683032   
38.Cai H, Kumar N, Baudis M. arrayMap: a reference resource for genomic copy number imbalances in human malignancies. PLoS One. 2012;7(5):e36944. doi: 10.1371/journal.pone.0036944. Epub 2012 May 18. PubMed 22629346  PubMed Central PMCID: PMC3356349.  
37.Wernstedt A, Valtorta E, Armelao F, Togni R, Girlando S, Baudis M, Heinimann K, Messiaen L, Staehli N, Zschocke J, Marra G, Wimmer K. Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL. Genes Chromosomes Cancer. 2012 Sep;51(9):819-31. doi: 10.1002/gcc.21966. Epub 2012 May 14. PubMed 22585707  PubMed Central PMCID: PMC3398144.  
36.Luebke AM, Baudis M, Matthaei H, Vashist YK, Verde PE, Hosch SB, Erbersdobler A, Klein CA, Izbicki JR, Knoefel WT, Stoecklein NH. Losses at chromosome 4q are associated with poor survival in operable ductal pancreatic adenocarcinoma. Pancreatology. 2012 Jan-Feb;12(1):16-22. doi: 10.1016/j.pan.2011.11.001. Epub 2011 Nov 20. PubMed 22487468   
35.Kumar N, Rehrauer H, Cai H, Baudis M. CDCOCA: a statistical method to define complexity dependence of co-occuring chromosomal aberrations. BMC Med Genomics. 2011 Mar 3;4:21. doi: 10.1186/1755-8794-4-21. PubMed 21371302  PubMed Central PMCID: PMC3061884.  
34.Begemann M, Spengler S, Kanber D, Haake A, Baudis M, Leisten I, Binder G, Markus S, Rupprecht T, Segerer H, Fricke-Otto S, Mühlenberg R, Siebert R, Buiting K, Eggermann T. Silver-Russell patients showing a broad range of ICR1 and ICR2 hypomethylation in different tissues. Clin Genet. 2011 Jul;80(1):83-8. doi: 10.1111/j.1399-0004.2010.01514.x. Epub 2010 Jul 22. PubMed 20738330   
33.Lacunza E, Baudis M, Colussi AG, Segal-Eiras A, Croce MV, Abba MC. MUC1 oncogene amplification correlates with protein overexpression in invasive breast carcinoma cells. Cancer Genet Cytogenet. 2010 Sep;201(2):102-10. doi: 10.1016/j.cancergencyto.2010.05.015. PubMed 20682394   
32.Eggermann T, Spengler S, Bachmann N, Baudis M, Mau-Holzmann UA, Singer S, Rossier E. Chromosome 11p15 duplication in Silver-Russell syndrome due to a maternally inherited translocation t(11;15). Am J Med Genet A. 2010 Jun;152A(6):1484-7. doi: 10.1002/ajmg.a.33398. PubMed 20503324   
31.Eggermann T, Schönherr N, Spengler S, Jäger S, Denecke B, Binder G, Baudis M. Identification of a 21q22 duplication in a Silver-Russell syndrome patient further narrows down the Down syndrome critical region. Am J Med Genet A. 2010 Feb;152A(2):356-9. doi: 10.1002/ajmg.a.33217. PubMed 20101688   
30.Peralta R, Baudis M, Vazquez G, Juárez S, Ortiz R, Decanini H, Hernandez D, Gallegos F, Valdivia A, Piña P, Salcedo M. Increased expression of cellular retinol-binding protein 1 in laryngeal squamous cell carcinoma. J Cancer Res Clin Oncol. 2010 Jun;136(6):931-8. doi: 10.1007/s00432-009-0735-9. Epub 2010 Jan 7. PubMed 20054560   
29.Spengler S, Schönherr N, Binder G, Wollmann HA, Fricke-Otto S, Mühlenberg R, Denecke B, Baudis M, Eggermann T. Submicroscopic chromosomal imbalances in idiopathic Silver-Russell syndrome (SRS): the SRS phenotype overlaps with the 12q14 microdeletion syndrome. J Med Genet. 2010 May;47(5):356-60. doi: 10.1136/jmg.2009.070052. Epub 2009 Sep 16. PubMed 19762329   
28.Gerstung M, Baudis M, Moch H, Beerenwinkel N. Quantifying cancer progression with conjunctive Bayesian networks. Bioinformatics. 2009 Nov 1;25(21):2809-15. doi: 10.1093/bioinformatics/btp505. Epub 2009 Aug 19. PubMed 19692554  PubMed Central PMCID: PMC2781752.  
27.Liu J, Bandyopadhyay N, Ranka S, Baudis M, Kahveci T. Inferring progression models for CGH data. Bioinformatics. 2009 Sep 1;25(17):2208-15. doi: 10.1093/bioinformatics/btp365. Epub 2009 Jun 15. PubMed 19528087   
26.Bug S, Dürig J, Oyen F, Klein-Hitpass L, Martin-Subero JI, Harder L, Baudis M, Arnold N, Kordes U, Dührsen U, Schneppenheim R, Siebert R. Recurrent loss, but lack of mutations, of the SMARCB1 tumor suppressor gene in T-cell prolymphocytic leukemia with TCL1A-TCRAD juxtaposition. Cancer Genet Cytogenet. 2009 Jul;192(1):44-7. doi: 10.1016/j.cancergencyto.2009.03.001. PubMed 19480937   
25.Boerma EG, Siebert R, Kluin PM, Baudis M. Translocations involving 8q24 in Burkitt lymphoma and other malignant lymphomas: a historical review of cytogenetics in the light of todays knowledge. Leukemia. 2009 Feb;23(2):225-34. doi: 10.1038/leu.2008.281. Epub 2008 Oct 16. Review. PubMed 18923440   
24.Bauer VL, Braselmann H, Henke M, Mattern D, Walch A, Unger K, Baudis M, Lassmann S, Huber R, Wienberg J, Werner M, Zitzelsberger HF. Chromosomal changes characterize head and neck cancer with poor prognosis. J Mol Med (Berl). 2008 Dec;86(12):1353-65. doi: 10.1007/s00109-008-0397-0. Epub 2008 Sep 23. PubMed 18810378   
23.Roos A, Elbracht M, Baudis M, Senderek J, Schönherr N, Eggermann T, Schüler HM. A 10.7 Mb interstitial deletion of 13q21 without phenotypic effect defines a further non-pathogenic euchromatic variant. Am J Med Genet A. 2008 Sep 15;146A(18):2417-20. doi: 10.1002/ajmg.a.32465. PubMed 18698619   
22.Nieländer I, Martín-Subero JI, Wagner F, Baudis M, Gesk S, Harder L, Hasenclever D, Klapper W, Kreuz M, Pott C, Martinez-Climent JA, Dreyling M, Arnold N, Siebert R. Recurrent loss of the Y chromosome and homozygous deletions within the pseudoautosomal region 1: association with male predominance in mantle cell lymphoma. Haematologica. 2008 Jun;93(6):949-50. doi: 10.3324/haematol.12656. PubMed 18515880   
21.Hoischen A, Ehrler M, Fassunke J, Simon M, Baudis M, Landwehr C, Radlwimmer B, Lichter P, Schramm J, Becker AJ, Weber RG. Comprehensive characterization of genomic aberrations in gangliogliomas by CGH, array-based CGH and interphase FISH. Brain Pathol. 2008 Jul;18(3):326-37. doi: 10.1111/j.1750-3639.2008.00122.x. Epub 2008 Mar 26. PubMed 18371186   
20.Baudis M. Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data. BMC Cancer. 2007 Dec 18;7:226. PubMed 18088415  PubMed Central PMCID: PMC2225423.  
19.Dürig J, Bug S, Klein-Hitpass L, Boes T, Jöns T, Martin-Subero JI, Harder L, Baudis M, Dührsen U, Siebert R. Combined single nucleotide polymorphism-based genomic mapping and global gene expression profiling identifies novel chromosomal imbalances, mechanisms and candidate genes important in the pathogenesis of T-cell prolymphocytic leukemia with inv(14)(q11q32). Leukemia. 2007 Oct;21(10):2153-63. Epub 2007 Aug 16. PubMed 17713554   
18.Liu J, Mohammed J, Carter J, Ranka S, Kahveci T, Baudis M. Distance-based clustering of CGH data. Bioinformatics. 2006 Aug 15;22(16):1971-8. Epub 2006 May 16. PubMed 16705014   
17.Mao X, Hamoudi RA, Talbot IC, Baudis M. Allele-specific loss of heterozygosity in multiple colorectal adenomas: toward an integrated molecular cytogenetic map II. Cancer Genet Cytogenet. 2006 May;167(1):1-14. PubMed 16682279   
16.Baudis M. Online database and bioinformatics toolbox to support data mining in cancer cytogenetics. Biotechniques. 2006 Mar;40(3):269-70, 272. PubMed 16568815   
15.Baudis M, Prima V, Tung YH, Hunger SP. ABCB1 over-expression and drug-efflux in acute lymphoblastic leukemia cell lines with t(17;19) and E2A-HLF expression. Pediatr Blood Cancer. 2006 Nov;47(6):757-64. PubMed 16206189   
14.Hidalgo A, Baudis M, Petersen I, Arreola H, Piña P, Vázquez-Ortiz G, Hernández D, González J, Lazos M, López R, Pérez C, García J, Vázquez K, Alatorre B, Salcedo M. Microarray comparative genomic hybridization detection of chromosomal imbalances in uterine cervix carcinoma. BMC Cancer. 2005 Jul 9;5:77. PubMed 16004614  PubMed Central PMCID: PMC1186020.  
13.Mao X, Hamoudi RA, Zhao P, Baudis M. Genetic losses in breast cancer: toward an integrated molecular cytogenetic map. Cancer Genet Cytogenet. 2005 Jul 15;160(2):141-51. PubMed 15993270   
12.Vandesompele J, Baudis M, De Preter K, Van Roy N, Ambros P, Bown N, Brinkschmidt C, Christiansen H, Combaret V, Lastowska M, Nicholson J, O'Meara A, Plantaz D, Stallings R, Brichard B, Van den Broecke C, De Bie S, De Paepe A, Laureys G, Speleman F. Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma. J Clin Oncol. 2005 Apr 1;23(10):2280-99. PubMed 15800319   
11.Kaiser U, Uebelacker I, Abel U, Birkmann J, Trümper L, Schmalenberg H, Karakas T, Metzner B, Hossfeld DK, Bischoff HG, Franke A, Reiser M, Müller P, Mantovani L, Grundeis M, Rothmann F, von Seydewitz CU, Mesters RM, Steinhauer EU, Krahl D, Schumacher K, Kneba M, Baudis M, Schmitz N, Pfab R, Köppler H, Parwaresch R, Pfreundschuh M, Havemann K. Randomized study to evaluate the use of high-dose therapy as part of primary treatment for "aggressive" lymphoma. J Clin Oncol. 2002 Nov 15;20(22):4413-9. PubMed 12431962   
10.Wessendorf S, Lichter P, Schwänen C, Fritz B, Baudis M, Walenta K, Kloess M, Döhner H, Bentz M. Potential of chromosomal and matrix-based comparative genomic hybridization for molecular diagnostics in lymphomas. Ann Hematol. 2001;80 Suppl 3:B35-7. Review. PubMed 11757703 
9.Baudis M, Cleary ML. Progenetix.net: an online repository for molecular cytogenetic aberration data. Bioinformatics. 2001 Dec;17(12):1228-9. PubMed 11751233   
8.Bentz M, Barth TF, Brüderlein S, Bock D, Schwerer MJ, Baudis M, Joos S, Viardot A, Feller AC, Müller-Hermelink HK, Lichter P, Döhner H, Möller P. Gain of chromosome arm 9p is characteristic of primary mediastinal B-cell lymphoma (MBL): comprehensive molecular cytogenetic analysis and presentation of a novel MBL cell line. Genes Chromosomes Cancer. 2001 Apr;30(4):393-401. PubMed 11241792 
7.Baudis M, Bentz M. Comparative genomic hybridization for the analysis of leukemias and lymphomas. Methods Mol Med. 2001;55:43-64. doi: 10.1385/1-59259-074-8:43. PubMed 21312103 
6.Bentz M, Plesch A, Bullinger L, Stilgenbauer S, Ott G, Müller-Hermelink HK, Baudis M, Barth TF, Möller P, Lichter P, Döhner H. t(11;14)-positive mantle cell lymphomas exhibit complex karyotypes and share similarities with B-cell chronic lymphocytic leukemia. Genes Chromosomes Cancer. 2000 Mar;27(3):285-94. PubMed 10679918 
5.Weber RG, Boström J, Wolter M, Baudis M, Collins VP, Reifenberger G, Lichter P. Analysis of genomic alterations in benign, atypical, and anaplastic meningiomas: toward a genetic model of meningioma progression. Proc Natl Acad Sci U S A. 1997 Dec 23;94(26):14719-24. PubMed 9405679  PubMed Central PMCID: PMC25103.  
4.Werner CA, Döhner H, Joos S, Trümper LH, Baudis M, Barth TF, Ott G, Möller P, Lichter P, Bentz M. High-level DNA amplifications are common genetic aberrations in B-cell neoplasms. Am J Pathol. 1997 Aug;151(2):335-42. PubMed 9250147  PubMed Central PMCID: PMC1858003.
3.Lichter P, Fischer K, Joos S, Fink T, Baudis M, Potkul RK, Ohl S, Solinas-Toldo S, Weber R, Stilgenbauer S, Bentz M, Döhner H. Efficacy of current molecular cytogenetic protocols for the diagnosis of chromosome aberrations in tumor specimens. Cytokines Mol Ther. 1996 Sep;2(3):163-9. Review. PubMed 9384700 
2.Bentz M, Bergerheim US, Li C, Joos S, Werner CA, Baudis M, Gnarra J, Merino MJ, Zbar B, Linehan WM, Lichter P. Chromosome imbalances in papillary renal cell carcinoma and first cytogenetic data of familial cases analyzed by comparative genomic hybridization. Cytogenet Cell Genet. 1996;75(1):17-21. PubMed 8995481 
1.Bentz M, Döhner H, Werner CA, Huck K, Baudis M, Joos S, Schlegelberger B, Trümper LH, Feller AC, Pfreundschuh M, et al. Identification of genetic imbalances in malignant lymphoma using comparative genomic hybridization. Stem Cells. 1995 Dec;13 Suppl 3:83-7. Review. PubMed 8747993 

Additional Publications

Contributions to Books

  • Cattaneo E, Baudis M, Buffoli F, Bianco MA, Zorzi F and Marra, G. (2011). Pathways and Crossroads to Colorectal Cancer. In R. C. Fitzgerald (Ed.), Pre-Invasive Disease: Pathogenesis and Clinical Management (pp. 369-394). Springer New York.
  • Saeger HD, Jauch KW, Bauer H, Lübke AM, Erbersdobler A, Baudis M, Hosch SB, Knoefel WT, Klein CA and Stoecklein NH. (2006). Genomisches Profiling mittels SCOMP bei duktalen Adenokarzinomen des Pankreas. In Chirurgisches Forum 2006 (pp. 27-28). Berlin, Heidelberg: Springer.
  • Baudis M and Bentz M. (2001). Comparative Genomic Hybridization for the Analysis of Leukemias and Lymphomas. In G. B. Faguet (Ed.), Hematologic Malignancies 55 (pp. 43-64). Humana Press.
Topic revision: r5 - 14 Sep 2017, MichaelBaudis
Michael Baudis